Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01940 ATGTCAGTGTCGTTCTCTTCAACTTCGCTTCCGTTCTCCGAATCTTCATTCGCATTCCAAAGACAACCACATCTTTGCTCTAATCCACTCACAGTTGCATCAAATAACTTCCACTCTGTAACTTGCGGTGGTCGTCTTGCACTGAATGTTGGAGGCACAGGCTTGTGTCGAAGATTTCGTGGCTTCAAACTGTGGGTACTTGAGAGACTCAACTTTCAATTTCAGTCACCAAAGCAACCTAAGAATAGAATTCGCATCGAAAATAATTTGGAAAATTCGGGTTTATCAAATGAAAAGGGACCAGTTTCTGATTCATCCTCGATTCTCCATGCTCCTGATGGTATGGTCACTTCCATGGAGTATCCTTCTTTGCTGCAGACAGGTTTGTCTGCTACTCCCATGGATGTTAGCGGGAAACCCTCACTTTGCATTTCTGTCATAGGAGCCACCGGTGAGCTGGCAAAGAGTAAGATTTTCCCTGCTTTATTTGCCCTCTACTACAGTGGCTTTCTTCCTGAGAATGTAGGCATTTTTGGGTATTCGAGGAAGGATATAACGGATGAAGACCTGCGATCTATTATAGCTTCAACACTAACATGCCGAGTTGATCATCAAGAGAATTGTGCGGACAAATTAGATGCTTTCCTTCGTAGAACATATCATATTAATGGAGGCTGTGACAATAAATATGGGATGTCCATGTTGAATGCCCGAATGGAGCAAATTGAGGGAGGATCCAAAACCAACAGGATATTCTACCTTTCTGTGCCACAAGAAGCAGTTTTAGATGTTACGGCTTGTCTTTCTAGCAGTGCTCAGACTCAAAAGGGATGGAATCGCATAATATTTGAGAAGCCATTTGGCTTTGATGCACTTTCTTCCTATAGGATGACACAATATCTTCTTTCAAACTTTGAGGAAAAGCAAATATATAGGATTGATCATCTTCTAGGAAGGAATCTCATTGAAAATCTCACAGTTTTAAGGTTTTCAAATCTAGTTTTTGAGCCACTTTGGAGTCGTACTTACATAGACAATGTACAGGTCATTTTATCAGAGGACCTGACCAAGCATCCAGGAAGATATTTCAGTGGCTATGGGATTATCCGTGATATTGTTCATAGTCACATTCTCCAAACAATTGCATTGCTTGCCATGGAACCACCAGTAAGCCTTGATGGAGAAGATATTCGAAATGAAAAGGTCAAGGTTTTGAGGTCAATTCGAAAATTGGAGCCTAAGGATGTCATTCTTGGGCAATATAGAGCAAGTGGTGGAGCCAAAGTTGATACATGCTTAAATGGTCTGACACCTACTTATTTTGCTGCTGCACTATACATTGACAATGCACGATGGGATGGTGTGCCATTTTTTATTAAAACAGGCTTGGGACTCATCAAACACCAAATGGAGATACGGATTCAATTTCGAAATGTTCCGGGTAATGTGTACCGTGAGTGCATGGGGCATAACATGGACCGTGCTGTGAATGAGCTCATTCTCCGTGATGTTCCTGATGAAGCTATTTTGGTGAGAGTTAACAACAAGGTTCCAGGACTAGGCTTGCAACTGGACTCTTCAGAACTAAATTTGCTTTACAAAGACAAGTACAACATGGAGGTTCCAGATTCGTATGAGCAACTTCTTCTTGATGTCATTGATGGGGACAACCATTTGTTCATGAGAAGTGATGAACTGGAAGCAGCATGGAACATTCTAACTCCAATTCTGAATGAGATAGACAAAGAAAACATATCAGTGGAGCTTTATGAGATGGGAGGTCGAGGTCCTGTTGGGGCATACTACCTTTGGGCAAAACATGGTGTCCGTTGGGTAGAGGATTAA 1845 0.4179 MSVSFSSTSLPFSESSFAFQRQPHLCSNPLTVASNNFHSVTCGGRLALNVGGTGLCRRFRGFKLWVLERLNFQFQSPKQPKNRIRIENNLENSGLSNEKGPVSDSSSILHAPDGMVTSMEYPSLLQTGLSATPMDVSGKPSLCISVIGATGELAKSKIFPALFALYYSGFLPENVGIFGYSRKDITDEDLRSIIASTLTCRVDHQENCADKLDAFLRRTYHINGGCDNKYGMSMLNARMEQIEGGSKTNRIFYLSVPQEAVLDVTACLSSSAQTQKGWNRIIFEKPFGFDALSSYRMTQYLLSNFEEKQIYRIDHLLGRNLIENLTVLRFSNLVFEPLWSRTYIDNVQVILSEDLTKHPGRYFSGYGIIRDIVHSHILQTIALLAMEPPVSLDGEDIRNEKVKVLRSIRKLEPKDVILGQYRASGGAKVDTCLNGLTPTYFAAALYIDNARWDGVPFFIKTGLGLIKHQMEIRIQFRNVPGNVYRECMGHNMDRAVNELILRDVPDEAILVRVNNKVPGLGLQLDSSELNLLYKDKYNMEVPDSYEQLLLDVIDGDNHLFMRSDELEAAWNILTPILNEIDKENISVELYEMGGRGPVGAYYLWAKHGVRWVED 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01940 614 NCBIfam glucose-6-phosphate dehydrogenase 142 612 IPR001282 GO:0006006|GO:0016614|GO:0050661
Vimu6g01940 614 Pfam Glucose-6-phosphate dehydrogenase, C-terminal domain 327 611 IPR022675 GO:0004345|GO:0006006|GO:0050661
Vimu6g01940 614 Gene3D - 139 312 - -
Vimu6g01940 614 Pfam Glucose-6-phosphate dehydrogenase, NAD binding domain 146 324 IPR022674 GO:0006006|GO:0016614|GO:0050661
Vimu6g01940 614 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 314 612 - -
Vimu6g01940 614 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 139 327 IPR036291 -
Vimu6g01940 614 PANTHER GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD 134 611 IPR001282 GO:0006006|GO:0016614|GO:0050661
Vimu6g01940 614 FunFam Glucose-6-phosphate 1-dehydrogenase 313 612 - -
Vimu6g01940 614 PRINTS Glucose-6-phosphate dehydrogenase signature 373 389 IPR001282 GO:0006006|GO:0016614|GO:0050661
Vimu6g01940 614 PRINTS Glucose-6-phosphate dehydrogenase signature 355 372 IPR001282 GO:0006006|GO:0016614|GO:0050661
Vimu6g01940 614 PRINTS Glucose-6-phosphate dehydrogenase signature 451 477 IPR001282 GO:0006006|GO:0016614|GO:0050661
Vimu6g01940 614 PRINTS Glucose-6-phosphate dehydrogenase signature 304 332 IPR001282 GO:0006006|GO:0016614|GO:0050661
Vimu6g01940 614 PRINTS Glucose-6-phosphate dehydrogenase signature 280 293 IPR001282 GO:0006006|GO:0016614|GO:0050661
Vimu6g01940 614 Hamap Glucose-6-phosphate 1-dehydrogenase [zwf]. 141 613 IPR001282 GO:0006006|GO:0016614|GO:0050661
Vimu6g01940 614 Gene3D Dihydrodipicolinate Reductase; domain 2 313 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01940 Vimu-Chr6 17447793 17453147 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01940 K00036 - gmx:100796541 1077.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01940 6 17447793 17453147 Vimu6g01940 6 17447793 17453147 ECH