Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01932 ATGGCAAGACTGGCGGCACTCCAACAGCACCTACTATCTTGCTCTCCCTTGACCCCCTCTCTTTCTGACTTAAGTGGAACCAGACTTCATACTCAACATCAGTTGAAGAGAAAATTATGGCAGCAAAAAGGGACTCTCTATGTATCCGCATCAAGCACCAAGAAAATCTTCAATATGGGAGGCGTCAGATTTATTGGAGTGTTTTTGTCTAGGCTCCTTGTCAAAGAGGGTCACCGAGTGACTTTATTTACAAGAGGTAAAGCGCCTGTCACTCAACAATTGCCAGGTGAATCTGACGGTGATTATGCTGTTGTTTCTTCCAAGATCTCGCATTCGAAAGGTGACAGAAAGGAGTTTGAATTTGAAAAATCCAGTCTCTCAGCAGAGGAGTTTGATGTTATTTGCGTAAATGGACGTGAGGCAGAAGAAGTTGAGCCTGTATTGGATGCTCTGCCAAATCTGGAACAGTTTCTTTACTGTTCTTCTGCTGGTGTCTATCTCAAATCTGACCTATTACCTCATGCAGAGGCTAAAGGTTTTGCAGTTTCTAGAAGGAAAGCAGCGTCTTTGATCTTATCAACCTACATTCTCTCAAAGGTCGGCATAGCACTGGCTCAGCAGTCTCCTGTGTTCCGGGAATACATAGATGCATTTGATGGTTATTCATTCCAGTACCCAAGGAGTTGGATTCAAGTCCGTGGTGCTGGGGCTGACATATTCTTCAGGGACCCTTATGTTCTTGATGAAAATCTCTCTCTTGAAATTTCTTCACCTTCATCCTCCCAATACAAGAGTGTTGAAGACTTGGGTCCACCCCAAGAAGCTGGAAAGAAAGTGCTCAAACAATATCTGACTGAGTTTATGTCTACTAGACTCGGTGTTAGACGTGAATCAAATATTCTTTCAACTTCTTCAAGAGTAGCTGATGATGGCAAGTTGTACTATGAAGTTGAGGTAAACATAAAGTCATATGCAAACAACAATGAACTTGCTGTTATGCCACAAGACCGGGTGGCTCGTCTGGAATGGGACCGGAGGTACCTATCTGTTCTTGGAGTTGAAAACAACCAACTGTATGAGTTGAGATTGCAGGTGCCGGAAAATGTGTTTGCAGAGGAGGAAAGTGATCTTCGTAGAGTCATGGATTCGTTTCGAGTGAGCAAGATTGCTGCTTAG 1176 0.4354 MARLAALQQHLLSCSPLTPSLSDLSGTRLHTQHQLKRKLWQQKGTLYVSASSTKKIFNMGGVRFIGVFLSRLLVKEGHRVTLFTRGKAPVTQQLPGESDGDYAVVSSKISHSKGDRKEFEFEKSSLSAEEFDVICVNGREAEEVEPVLDALPNLEQFLYCSSAGVYLKSDLLPHAEAKGFAVSRRKAASLILSTYILSKVGIALAQQSPVFREYIDAFDGYSFQYPRSWIQVRGAGADIFFRDPYVLDENLSLEISSPSSSQYKSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRVADDGKLYYEVEVNIKSYANNNELAVMPQDRVARLEWDRRYLSVLGVENNQLYELRLQVPENVFAEEESDLRRVMDSFRVSKIAA 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01932 391 Pfam PsbP 211 386 IPR002683 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Vimu6g01932 391 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 54 176 IPR036291 -
Vimu6g01932 391 Gene3D Mog1/PsbP, alpha/beta/alpha sandwich 205 386 - -
Vimu6g01932 391 SUPERFAMILY Mog1p/PsbP-like 212 386 IPR016123 -
Vimu6g01932 391 PANTHER - 177 386 - -
Vimu6g01932 391 NCBIfam photosystem II reaction center PsbP 186 386 - -
Vimu6g01932 391 Gene3D - 29 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01932 Vimu-Chr6 17398339 17401328 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01932 - - vra:106757660 729.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01932 6 17398339 17401328 Vimu6g01932 6 17398339 17401328 ECH