Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01929 ATGGCAGACTTGGAAAACATGCTTCTTGAGGCAGCTGGAAGGACCAGGAACTCCAAATCAAAACGTGAGGGTGGTGCGGCGTTCTCCGATGGTGGAAGTCATTCTAGAGAAGAAGACTCTGATGAGGGTGCAAACAAGAAACCACAGAGATTAGACGTCAGCAGAAGAAGTAGTAATAATAGTAATCGTAATGAGCATGGTGGGGGTGACTTGGAGGATGGTGTTCCTGATAGAGATGGTGGCAGCAGTGAAGAATCTGATGTTGGAAGTGATCTCTACAAGAACGAAGACGACAAACAGAAGCTCGCAAATATGACAGAACTTGAAAGGGAGATGATTTTGTCTGATAGAGCAACCAAAAAATGTGAAAAGGAATTCAAAGAGAAAATGAGATCGAAGAGGGAAAACAAAAATGCAAGTGCAAAGACTGGTTCTGCAGCAAATTCATCATATCATCCATCATCTGCCAAGGTTCGTTCCTCGGCTAGAAATGCTGAGAGGACGGCTTCAAAGGGAGATGTTCTAAGTGAATTGCGCGCGAAAAGGATGAAGCAACAAATTTTAGACCCTCATGATAAATTGGGAAAGGCTTCAGGATCAGGCTCAACTAGCAAGCAGAAACCTGGGGTCACGGCAAGTCCAAGTAGCTCTAGTCAGAGTGAGAGTGTTATTCGGTCCGACAGTGAAAGAGACTCGTCTGATGATGGTGGATTGGGTGACAGTGATGATGACAAGAACATTCATGAATCAAGGATGCCAACTTTTGAGAACATAAGGGAAATCACCATTAGGAGGTCAAAGCTCGTGAAGTGGTTGAATGAACCATTTTTTGAGGAGTTAATTGTTGGATGTTTTGTGAGAATTGGCATAGGAAAGTCAGAAAGGGGACCTGTTTACAGGCTCTGCACAGTGCAGAGAGTTGATGGAGGTGACCCAAATAAGCATTACAAGGTAGAGAATAGAGTCACTCACAAGTATCTAGTCTGTGTGTGGGGAAGTGAGAACTCTGCTAAAAAGTTTCAGGTGGCTGTAGTTTCAGATTCTGCACCCTTGGAGAGAGAGTTCAGACAGTGGGTTAGAGAAGTTGAAAGAACTTGCAGCCAAATGCCGAGTAAGATGAGTGTGCTGGAGAAGAAGGAGGCCATAAGAAGAACAAGCGCTTATGTTTATTCAGCCGCTACTGTGAAGCAGATGTTAGAGGAGAAAAAATCAGCCCCATCTAGGCCACTGAACATTGCAGTGGAGAAGGATCGTTTGAAGAATCTGTTGGAGGTTGCAAAGTGTAAGAATGATGAAGCAGAGATGGATAGGATCTTGAGAAAGCTCGCGGATTTGGAAGCATCTCGTAAATCCCGGGAGAATGATGCCAAGGCTTTGAGGCTGGCTGAGATGAACAGGAAGAACAAGGTTGAGAACTTCAAGAACTTGTCTGAGCATAAACAGTTGAATGCCAATTTGAAAGCTGGTGAGGAAGGCTATGATCCCTTTTCGAGGAGGTGGACAAGGTCGAGGAATTACTACGGTAAAGATACTGAAAAGAATGAAGATAAAGGAGAAAAGGATGGTGAAGTTAGTAAGGGGGAAGAGAAAGAAGAAAGAGCTGTTACAACAAAGATTGGTGTTGAAGTCACTGAATTAGCATTGCAAGCAGCTGCTAATGAAGGGAAGTTGATTGATACCAATGCTCCTGTGGATGGTGGAACAGAATCATACATGCTGCATGATTTCGACTTGCCTATCTCTTTGGCTGAACTCAAGAATTTTGGTGGACCACAGGGACTCAAAAATGGATTTCTGTCAAGGAAACAAAAAATAGAAGAAACAGTTGGGTGCCGGGTTTCTGAGAATGATGGGAGTAGGCATGCACTTACATTAACTATCAGTGACTACAAGAGAAGAAGAGGACTTCTGTGA 1914 0.4373 MADLENMLLEAAGRTRNSKSKREGGAAFSDGGSHSREEDSDEGANKKPQRLDVSRRSSNNSNRNEHGGGDLEDGVPDRDGGSSEESDVGSDLYKNEDDKQKLANMTELEREMILSDRATKKCEKEFKEKMRSKRENKNASAKTGSAANSSYHPSSAKVRSSARNAERTASKGDVLSELRAKRMKQQILDPHDKLGKASGSGSTSKQKPGVTASPSSSSQSESVIRSDSERDSSDDGGLGDSDDDKNIHESRMPTFENIREITIRRSKLVKWLNEPFFEELIVGCFVRIGIGKSERGPVYRLCTVQRVDGGDPNKHYKVENRVTHKYLVCVWGSENSAKKFQVAVVSDSAPLEREFRQWVREVERTCSQMPSKMSVLEKKEAIRRTSAYVYSAATVKQMLEEKKSAPSRPLNIAVEKDRLKNLLEVAKCKNDEAEMDRILRKLADLEASRKSRENDAKALRLAEMNRKNKVENFKNLSEHKQLNANLKAGEEGYDPFSRRWTRSRNYYGKDTEKNEDKGEKDGEVSKGEEKEERAVTTKIGVEVTELALQAAANEGKLIDTNAPVDGGTESYMLHDFDLPISLAELKNFGGPQGLKNGFLSRKQKIEETVGCRVSENDGSRHALTLTISDYKRRRGLL 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01929 637 MobiDBLite consensus disorder prediction 508 534 - -
Vimu6g01929 637 FunFam RNA polymerase-associated protein RTF1 253 385 - -
Vimu6g01929 637 MobiDBLite consensus disorder prediction 1 251 - -
Vimu6g01929 637 MobiDBLite consensus disorder prediction 139 163 - -
Vimu6g01929 637 Pfam Plus-3 domain 257 362 IPR004343 GO:0003677
Vimu6g01929 637 Coils Coil 416 462 - -
Vimu6g01929 637 SMART rtf1 252 364 IPR004343 GO:0003677
Vimu6g01929 637 PANTHER UNCHARACTERIZED 203 636 - -
Vimu6g01929 637 MobiDBLite consensus disorder prediction 197 223 - -
Vimu6g01929 637 MobiDBLite consensus disorder prediction 66 138 - -
Vimu6g01929 637 Gene3D - 252 385 IPR036128 GO:0003677
Vimu6g01929 637 MobiDBLite consensus disorder prediction 164 191 - -
Vimu6g01929 637 MobiDBLite consensus disorder prediction 32 53 - -
Vimu6g01929 637 MobiDBLite consensus disorder prediction 224 251 - -
Vimu6g01929 637 ProSiteProfiles Plus3 domain profile. 252 387 IPR004343 GO:0003677
Vimu6g01929 637 SUPERFAMILY Plus3-like 254 383 IPR036128 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01929 Vimu-Chr6 17385010 17386983 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01929 K15178 - gmx:100793188 981.474