Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01927 ATGTCTCTGCGACCCAGTTCGAGCTCTGGTTCTCCTTCGAAGACAAGGAGAAAAATGTATAAGGGTGGAATTGACGCAGAAGACAGTCGGAGAAGGAGGGAAAAAGATCTTGTCAGCATCAGAAAAATCAAACGCCAAACCACTCTTCTCAAGAAACGACAAGAACAGGAAGAACGTACCTTTGATACGCTACTGGATGCTGTTCCTGAGATAGTCAAACGTATATGTGATGAGTATCCTCAGAAACAATTGGAGGCAACTGCTTACTTAAGAACTATTTTAACACTTGGTGACCCGGCCCCTCCACTTGATGACCTCGTTAAGCATGGTATCCTCCCTCGCTTTGTGGAGTTATTATCAAGGGACGATGCACCTTATTTGCAGGTACAAGTTCTGTGGGTCATATCAGATTTTATTTTCACATCATCCCAACACAAAAGTGCTGTGGTTGAACTTGGTTTTGTTCCTCTCTTGGTCAATCTTGTCTCTAGTAGCCATGATGATATAAGAGAAGAGGCAATATGGATTTTAGGAAACATTGTTGGTGACTCCCCAGAATTTAGGGATCCTATTCTTAGCCATGGTGCTGTCATGCCATTATTAAGTCAGTTGCAACCACATTCACCATTGCATATAATAAAGGCTGCTACGTTTACTTTATCTGTTTTGCTCCGTGGAATACCTCCAGTAGATTTTGAACTGGTAAAGATTGCCTTACCTGCTCTTCAGCGACTCATCCATGTGACCGATGAAGATGTTTTAGCAGATACATGCTGGACTTTGGCTTACCTTTCGGAAGGTCGTATGGACAATGTTCAAGCTATTATTGAATTAGGAGTTTGCCCAAAACTTGTGCAAGTTCTTCAGTATCAATCAGATGGAGTTATTATACCTGCACTTGAGGCTTTAGGAAATATTGCTGCTGGTGGTGAGGCTCATACACAGGCTGTGATCGATGCCAACATTATTCCTGCTCTTGTTAAAGTTGTCCGTAATGGTGAGTTTGAGGTGAAGAAGGAGGCTGCCTGCGCGATCTTCAATGTCACTTCTAAAGGATCTGATGAGAATATCAGGGTCCTTGCGGCTGAGGGTTGCATTGAGGCACTATGTGAACTCTTGACCTGTCCAGATCCAAAGCTTGTGGCAATTTGTCTGGAGGGGCTGGTGAACATTTTGGCTGTTGGAGAAGCTAACAAGGATGAGAAAGGCAATGTTTTTGCTCGAAGGCTTGAGGAATGTGGAGGATTGGACAAGATTGAAACACTGCACTTTCATGAGAACAATGAGATTCATACCAGAGCTCTTTGGGTTGAACTCACACAGACAGATAGTTTCTTGGAGGAAAGAAAAAGCAAGACTGAAGAATGTCTCTGCGACCCAGTTGGAGTTCTGGTTCTCCTTCGAATACAAGGAGAAAGATTTATAAGACTGGAATTGATGCAGAAGACAGTAGGAGAAGGAGGGAAAAGGACCTCGTTGGCATCAGAAACATCAAACGTCAAACCGCTCTTCGCAAGAAACGAGAAGAACGCATCTTCGCTGCTGGATGCTATTCCTGAGATAGGGAAACGTGTATGTGATCAATACCCTGACAAACAATCGGAGACACATGCTCACTTAAAAACTTTTGTAACACCTGGTGAATCAGCCCTTCCAGTTGATGAGCTCGTTAAAAATGGTATTCTCCCTCACTTTCTGAAGTTATTATCAAGGGACGATGCACCCAAGTTGCAGATAGAAGTTCTGTGGGTTATATCCGATTTTGTTTCCACATCATTCCAACACAAAAGTGCTGTCGTTGAAATTGGAGTTATTCCTCTCTTGATCAATTTTTTCTCTAGTACCCGCGATGATACAAAAGAAGAGGCAATATGGTGTTTAGGAGGCATTGCTAATGGCTGCCCAGAATTTAGGGATCTTATTCTTAGCCATGGTGCTCTCATTGCATTATGTCACTTGGAACCACATTCATCATTGTATATAGTAAGAGCTGCTACGTGGTGTTTATCTGTTTTGCTCCGTGGGAGGCCTCCAGTATATTTTGAACAGGTAAAGATTGCCTTACCTGCTCTTCAGCGACTCATCAATGAGACCGATGAAGATGTTTTAACAGATACATGCTGGACTTTAAATTACCTTTCGGAAGGTCCTATGGACAATGTTCAAGCTATTATTGAATTAGGAGTTTGCCCAAAACTTGTGCAACTTCTTCAGTATCAATCAGATGGAGTTGTTCTACCTGCACTTGAGGCTTTAGGAAATATTGCTGCTGTTGGTGAGGCTCATACACAGTTTCTGATCAATAACCAATTGCTCCCGTGTCTTCGCCAACTCCTTACTGGTGAATACACAAAAACCATATTTAAAGAAGCTAGTTGGACAATCGCGGTTATCTCATCTTGGACTCGAGCTCAAGTACAGGCTGTGATCGATGCCAACATTATTCCTGTTCTTGTTAAAATTGTCTATAATGCTGAGTTTGAGGTGAAGAAGGAGGCTGCCTGCGCGATCTTTAATGTCACGTGTTTAGGATCTGATGACAATATCAGGGTCCTTGCGGCTGAGGGTTGTATTGAGGCACTATGTGAACTCTTGACCTGTCCAGAACCAAAGCTTGTGGCAATTTGTCTGGGGGGCCTGCTGGTCATTTTGGCAGCTGGAAATGCTGACAAGGATGAGAAAGGCAATGTTTTTGCTCAAAGGCTTGAGGAATGTGGAGGATTGGAAAAGGTTGAAACATTGCAACTTCATGAGAACGATGACATTCATAAGAGAGCTGTGTGGATTTCGGATTTCTTTCGAGCAAAGAATTAG 2814 0.4289 MSLRPSSSSGSPSKTRRKMYKGGIDAEDSRRRREKDLVSIRKIKRQTTLLKKRQEQEERTFDTLLDAVPEIVKRICDEYPQKQLEATAYLRTILTLGDPAPPLDDLVKHGILPRFVELLSRDDAPYLQVQVLWVISDFIFTSSQHKSAVVELGFVPLLVNLVSSSHDDIREEAIWILGNIVGDSPEFRDPILSHGAVMPLLSQLQPHSPLHIIKAATFTLSVLLRGIPPVDFELVKIALPALQRLIHVTDEDVLADTCWTLAYLSEGRMDNVQAIIELGVCPKLVQVLQYQSDGVIIPALEALGNIAAGGEAHTQAVIDANIIPALVKVVRNGEFEVKKEAACAIFNVTSKGSDENIRVLAAEGCIEALCELLTCPDPKLVAICLEGLVNILAVGEANKDEKGNVFARRLEECGGLDKIETLHFHENNEIHTRALWVELTQTDSFLEERKSKTEECLCDPVGVLVLLRIQGERFIRLELMQKTVGEGGKRTSLASETSNVKPLFARNEKNASSLLDAIPEIGKRVCDQYPDKQSETHAHLKTFVTPGESALPVDELVKNGILPHFLKLLSRDDAPKLQIEVLWVISDFVSTSFQHKSAVVEIGVIPLLINFFSSTRDDTKEEAIWCLGGIANGCPEFRDLILSHGALIALCHLEPHSSLYIVRAATWCLSVLLRGRPPVYFEQVKIALPALQRLINETDEDVLTDTCWTLNYLSEGPMDNVQAIIELGVCPKLVQLLQYQSDGVVLPALEALGNIAAVGEAHTQFLINNQLLPCLRQLLTGEYTKTIFKEASWTIAVISSWTRAQVQAVIDANIIPVLVKIVYNAEFEVKKEAACAIFNVTCLGSDDNIRVLAAEGCIEALCELLTCPEPKLVAICLGGLLVILAAGNADKDEKGNVFAQRLEECGGLEKVETLQLHENDDIHKRAVWISDFFRAKN 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01927 937 MobiDBLite consensus disorder prediction 1 15 - -
Vimu6g01927 937 Gene3D - 65 437 IPR011989 -
Vimu6g01927 937 SUPERFAMILY ARM repeat 497 932 IPR016024 -
Vimu6g01927 937 Gene3D - 15 54 IPR036975 GO:0006606
Vimu6g01927 937 FunFam Importin subunit alpha 515 934 - -
Vimu6g01927 937 MobiDBLite consensus disorder prediction 1 34 - -
Vimu6g01927 937 PANTHER IMPORTIN ALPHA 526 929 - -
Vimu6g01927 937 SMART arm_5 634 674 IPR000225 GO:0005515
Vimu6g01927 937 SMART arm_5 227 266 IPR000225 GO:0005515
Vimu6g01927 937 SMART arm_5 268 308 IPR000225 GO:0005515
Vimu6g01927 937 SMART arm_5 310 350 IPR000225 GO:0005515
Vimu6g01927 937 SMART arm_5 549 590 IPR000225 GO:0005515
Vimu6g01927 937 SMART arm_5 845 885 IPR000225 GO:0005515
Vimu6g01927 937 SMART arm_5 676 715 IPR000225 GO:0005515
Vimu6g01927 937 SMART arm_5 591 632 IPR000225 GO:0005515
Vimu6g01927 937 SMART arm_5 142 182 IPR000225 GO:0005515
Vimu6g01927 937 SMART arm_5 802 842 IPR000225 GO:0005515
Vimu6g01927 937 SMART arm_5 759 800 IPR000225 GO:0005515
Vimu6g01927 937 SMART arm_5 353 393 IPR000225 GO:0005515
Vimu6g01927 937 SMART arm_5 98 140 IPR000225 GO:0005515
Vimu6g01927 937 SMART arm_5 184 225 IPR000225 GO:0005515
Vimu6g01927 937 SMART arm_5 717 757 IPR000225 GO:0005515
Vimu6g01927 937 Pfam Atypical Arm repeat 407 435 IPR032413 -
Vimu6g01927 937 Pfam Atypical Arm repeat 897 929 IPR032413 -
Vimu6g01927 937 ProSiteProfiles IBB domain profile. 1 62 IPR002652 GO:0006606|GO:0061608
Vimu6g01927 937 MobiDBLite consensus disorder prediction 18 34 - -
Vimu6g01927 937 Pfam Armadillo/beta-catenin-like repeat 270 308 IPR000225 GO:0005515
Vimu6g01927 937 Pfam Armadillo/beta-catenin-like repeat 313 349 IPR000225 GO:0005515
Vimu6g01927 937 Pfam Armadillo/beta-catenin-like repeat 594 631 IPR000225 GO:0005515
Vimu6g01927 937 Pfam Armadillo/beta-catenin-like repeat 719 757 IPR000225 GO:0005515
Vimu6g01927 937 Pfam Armadillo/beta-catenin-like repeat 142 181 IPR000225 GO:0005515
Vimu6g01927 937 Pfam Armadillo/beta-catenin-like repeat 353 392 IPR000225 GO:0005515
Vimu6g01927 937 Pfam Armadillo/beta-catenin-like repeat 804 840 IPR000225 GO:0005515
Vimu6g01927 937 SUPERFAMILY ARM repeat 14 437 IPR016024 -
Vimu6g01927 937 Gene3D - 516 933 IPR011989 -
Vimu6g01927 937 Pfam Importin beta binding domain 16 87 IPR002652 GO:0006606|GO:0061608
Vimu6g01927 937 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 153 195 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01927 Vimu-Chr6 17367979 17375913 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01927 K15042 - gmx:100793195 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01927 6 17367979 17375913 Vimu6g01927 6 17367979 17375913 ECH