Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01925 ATGGCAATGACATTTGAAACGGGTCGTTTTCATCTTTCGCGCCCAACGGCCTCAAAGCACTTGTTATTCGCGGCCATTATCAAACGACCAAAACCCGTTTCGCTTCCTTCTTCTCGGTTCTTCCATTGCCGATCGAGACGCCTCGTTTTGACGCAGAGATTCGCAGTGAAAGTCTGCGCGGTGAAAGTCGAGCAGAAGAACGTCGCTGCGGAATCAGGAGAGTGGGGGAAGGTTTCCGCGGTGCTCTTCGACATGGACGGCGTGCTTTGCAACAGCGAAGAGCCTTCTAGAAAAGCCGGCGTCGATTTGTTTGCCGAGATGGGCGTCGAAGTCACCGTCGACGATTTTGTGCCGTTTACGGGAACAGGAGAAGCTAACTTTTTGGGAGGTGTTGCTTCTGTTAAGGGAGTTAAAGGATTTGACCCAGAAGCTGCCAAAAAAAGGTTCTTTGAAATATATTTAGATAAGTATGCAAAACCAGATTCTGGAATTGGATTTCCGGGTGCTCTTGAACTCATTTCTCAGTGTAAAAGCAAAGGCCTTAAAGTGGCTGTTGCATCTAGTGCTGATCGTGTAAAGGTTGATGCAAATCTAGCTGCTGCTGGTTTACCATTGTCAATGTTCGATGCGATTGTCTCTGCAGATGCTTTCAAGAATTTGAAACCTGCTCCTGATATTTTCTTAGCTGCATCGAGAATATTGAATGTGCCCCCCAGTGAGTGTATTGTTATAGAAGATGCGCTAGCTGGAGTGCAGGCTGCCAAAGCTGCGCAAATGAGATGCATAGCTGTAAGGACCTCAATATCAGATGCAGTTTTAGAATCTGCAGAGCCATCATTTATCCGGGATGACATAGGAAGTGTTTCACTTGAGGATATTCTCTTTGGTGGCACTGTTGGATATAATGAGAGGATGCAGGGCTCTGAAACTCTAAATAATTTTGCAGAGTCTTCATCTACTGTGCTTGATGGAGGGTTGCAGGGTTCTCGGCGAGATATACTGAGATATGGAAGTCTGGGCATTGCTATCTCTTGCCTTATCTTCACCTTAAATAACTGGAAGGCAATGCAATATGCTTCTCCAAAAGCAGTTTGGAATCAGTTGTTTGGTGTTGCCCTGCCACCCTTGGAGCAGAAAGATAACTCAAGATATGATAGGATCCAACAATTTGTGAACTACATTTCTGATCTGGAAAGCAGGGGAAATGCTCAGATAGTTCCAGAATTTCCTTCTAAACTTGATTGGCTGAATACAGCTCCACTTCAGTTTCGCAGGGATCTGAAAGGAAAAATTGTTTTGCTGGATTTCTGGACTTATTGTTGTATAAACTGTATGCATGTGTTGCCAGACTTAGATGCTTTGGAGAAAAAATACAAAGATATGCCGTTTGTTGTCGTGGGTGTTCATTCTGCAAAGTTTGATAACGAGAAAGATTCTGAGGCCATTCGCAATGCAGTTTTACGCTATGGAATTTCTCACCCAGTTGTCAATGACGGAGACATGTTTCTTTGGAGGAACTTGGGTATAAGTTCATGGCCAACATTTGCTATAGTTGGCCCTGATGGTAAGCTTCTTGCACAACTAGCAGGAGAGGGTCACAGGAAGGATCTAGATGATTTTGCGGAGGCTGCCCTTCTATATTATGGAAAGCAGAACATGCTGGACAATACGCCAATTTCCTTGAGTTTGGAGAAAGATAATGATCCACGCCTGTTGACTTCTCCATTAAAGTTTCCAGGAAAGCTAGCAGTTGATGTCCTTAATAACAGGCTTTTTATTTCTGACAGCAACCATAATCGTATAGTGGTTACTGACCTTGATGGCAATTTTATTGTACAAATCGGGAGCAGTGGGGAGGAAGGTTTGAACGATGGTTCTTTTGATGATGCTACTTTTAACCGTCCTCAGGGCCTTGCTTATAATGCAAAGAAAAACATCCTTTATGTTGCAGACACTGAAAACCATGCTCTGAGGGAAATTGATTTTGTTAATGAGAAAGTGAGGACCCTTGCTGGAAATGGGACCAAGGGCTCTGATTATGTTGGAGGTGGAAAAGGAGGCACACAGCTTCTCAATTCCCCTTGGGATGTCTGCTTTCATCCATTCGAAGAAACAATTTATATTGCCATGGCTGGCCAACATCAGATTTGGGAGCACAATTTATTAGAGGCAACTTCCAGTGCATTTAGTGGTGATGGCTATGAAAGAAACTTAAATGGATCAAGTTCTACAAACACGTCATTTGCACAACCTTCTGGTCTTTCGTTGTCTCAAGATCTAAGCAAGATCTACATCGCTGATAGTGAGAGTAGTTCAATTCGAGTTGTGGATCTGAAAACAGGAGGATCACAGTTGTTAGCTGGTGGTGACCCAATGTTTGCTGACAATTTGTTTAAGTTTGGTGATCAAGATGGAATAGGCTCGGATGTACTTCTTCAACATCCATTGGGGGTTATGTGTGCAAATGATGGTGAAATTTATATCGCAGATAGCTACAATCACAAGATCAAGAAGCTAGATCCAACTAGTAAAAGAGTTAGCACCATTGCAGGAACTGGAAAAGCTGGTTTCAAAGATGGAACGGCTGTAAAAGCTCAGCTCTCTGAACCGGCAGGAATTGTTGAAGGGAACAAGGGTATGCTCTGTTTACTTCCTTCTACTTCATTGATTGTAGGGCTTTCACATATTACTCTGAATGAGTCTATAAGATGGAATGTATATTGTGAAAGTGTATATCGGGGTCGTGACAACGTCAATGGTTGTGGTCGTGGTGGTTGGTTCTCAAACATACAGTGCCAATTATGCTTGAGGTGTGGTCATGTTGCTACATATCGTTGTCCTTATTACGATCAGCCCTATTGGTTGCAATGTGAAAATGTATCGCACTTTGCCCCTCCATGGAATCGCATCTCTTGCCCCACCATGTCCTCAATTTCAACGCCAAGTAGATTATTTATAGCTGACACAAACAACAGCTTAATTCGATATCTAGATTTAAACGCTGATGAAACTGAACTCCGTACCTTGGAGCTTAAAGGAATTCAGCCTCCTAAACCAAAATCAAGATCTTTTAAACGTCTTAGACGACGAGCATCAGCCGACACAGTGCCAATTCCGGTTGATGCCATTTCATCAAATGAGGGAAACTTGTCTATTAAAATATCATTACCAAGCGAGTATCATTTCTCAAAGGAAGCACGCAGTAAATTCAGCGTGGATATTGAACCTGAAGATGCTGTGAATATTGAACCCCTCGATGGATTCCTTAGTCCAGAAGGATCTGCAACTCTTCACTTTAAGAGATCCTCTAACTCTTCTTCAGTGGGAAGAATTAATTGCAAGGTTTACTATTGCAAGGAAGATGAAGTTTGTTTGTACCAGTCTTTGCTGTTTGAGGTCCCCTTCCCAGAGGGTGTTTCTAGCCCTGCCAAAGCAGACGTCACTCTCGCACATTTTGTGAAACCCAAAACTTTAACCAGCAACTTACTGGAGACAGTTTCCCCTGAGTCGGTGACACCGTAA 3522 0.4313 MAMTFETGRFHLSRPTASKHLLFAAIIKRPKPVSLPSSRFFHCRSRRLVLTQRFAVKVCAVKVEQKNVAAESGEWGKVSAVLFDMDGVLCNSEEPSRKAGVDLFAEMGVEVTVDDFVPFTGTGEANFLGGVASVKGVKGFDPEAAKKRFFEIYLDKYAKPDSGIGFPGALELISQCKSKGLKVAVASSADRVKVDANLAAAGLPLSMFDAIVSADAFKNLKPAPDIFLAASRILNVPPSECIVIEDALAGVQAAKAAQMRCIAVRTSISDAVLESAEPSFIRDDIGSVSLEDILFGGTVGYNERMQGSETLNNFAESSSTVLDGGLQGSRRDILRYGSLGIAISCLIFTLNNWKAMQYASPKAVWNQLFGVALPPLEQKDNSRYDRIQQFVNYISDLESRGNAQIVPEFPSKLDWLNTAPLQFRRDLKGKIVLLDFWTYCCINCMHVLPDLDALEKKYKDMPFVVVGVHSAKFDNEKDSEAIRNAVLRYGISHPVVNDGDMFLWRNLGISSWPTFAIVGPDGKLLAQLAGEGHRKDLDDFAEAALLYYGKQNMLDNTPISLSLEKDNDPRLLTSPLKFPGKLAVDVLNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLNDGSFDDATFNRPQGLAYNAKKNILYVADTENHALREIDFVNEKVRTLAGNGTKGSDYVGGGKGGTQLLNSPWDVCFHPFEETIYIAMAGQHQIWEHNLLEATSSAFSGDGYERNLNGSSSTNTSFAQPSGLSLSQDLSKIYIADSESSSIRVVDLKTGGSQLLAGGDPMFADNLFKFGDQDGIGSDVLLQHPLGVMCANDGEIYIADSYNHKIKKLDPTSKRVSTIAGTGKAGFKDGTAVKAQLSEPAGIVEGNKGMLCLLPSTSLIVGLSHITLNESIRWNVYCESVYRGRDNVNGCGRGGWFSNIQCQLCLRCGHVATYRCPYYDQPYWLQCENVSHFAPPWNRISCPTMSSISTPSRLFIADTNNSLIRYLDLNADETELRTLELKGIQPPKPKSRSFKRLRRRASADTVPIPVDAISSNEGNLSIKISLPSEYHFSKEARSKFSVDIEPEDAVNIEPLDGFLSPEGSATLHFKRSSNSSSVGRINCKVYYCKEDEVCLYQSLLFEVPFPEGVSSPAKADVTLAHFVKPKTLTSNLLETVSPESVTP 1173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01925 1173 ProSiteProfiles NHL repeat profile. 812 842 IPR001258 GO:0005515
Vimu6g01925 1173 Pfam Thioredoxin-like 429 523 IPR012336 -
Vimu6g01925 1173 ProSiteProfiles Thioredoxin domain profile. 400 546 IPR013766 -
Vimu6g01925 1173 CDD NHL-2_like 614 1058 IPR045302 -
Vimu6g01925 1173 SUPERFAMILY HAD-like 78 287 IPR036412 -
Vimu6g01925 1173 Pfam NHL repeat 632 657 IPR001258 GO:0005515
Vimu6g01925 1173 Gene3D - 792 882 IPR011042 -
Vimu6g01925 1173 Gene3D - 548 718 IPR011042 -
Vimu6g01925 1173 CDD HAD_BPGM-like 80 266 - -
Vimu6g01925 1173 SUPERFAMILY Thioredoxin-like 404 539 IPR036249 -
Vimu6g01925 1173 NCBIfam HAD-IA family hydrolase 206 264 IPR006439 -
Vimu6g01925 1173 Gene3D Putative phosphatase; domain 2 91 162 IPR023198 -
Vimu6g01925 1173 SMART LY_2 569 611 IPR000033 -
Vimu6g01925 1173 SMART LY_2 741 783 IPR000033 -
Vimu6g01925 1173 FunFam NHL repeat-containing protein 2 384 548 - -
Vimu6g01925 1173 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 78 89 IPR006439 -
Vimu6g01925 1173 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 176 189 IPR006439 -
Vimu6g01925 1173 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 208 224 IPR006439 -
Vimu6g01925 1173 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 226 246 IPR006439 -
Vimu6g01925 1173 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 77 285 - -
Vimu6g01925 1173 PANTHER NHL REPEAT-CONTAINING PROTEIN 2 104 1165 - -
Vimu6g01925 1173 Gene3D - 80 269 IPR023214 -
Vimu6g01925 1173 Pfam Haloacid dehalogenase-like hydrolase 81 264 IPR041492 -
Vimu6g01925 1173 SFLD Haloacid Dehalogenase 77 285 - -
Vimu6g01925 1173 Gene3D Glutaredoxin 377 547 - -
Vimu6g01925 1173 SUPERFAMILY YWTD domain 565 849 - -
Vimu6g01925 1173 FunFam NHL repeat-containing protein 2 561 717 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01925 Vimu-Chr6 17340334 17361179 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01925 - - gmx:100795843 1583.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01925 6 17340334 17361179 Vimu6g01925 6 17340334 17361179 ECH