Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01920 ATGTCACGTTTACTACGAAAAGCCCTTAGGACTAAGGCCTTGTCCCTGTTTCTGCACAAACACGTCGGAAACTCGTTCGAGTCGCATCACACTCTGGCTTACTCAAGCTGGTTTTGGTGTCGCCAATCATCACATTCCCTTCCACATAAACCCACTCCTTGCTTCGCTTCAAATTCGATCCCAAGTTTCAGCTTCTCTAACGCGCTTCTCCAAATTCGCTTTTGGGCCTCTGAGGCCGCCGCCTCTGAACCCTCAACCTCTGATGGGCTCACGGTCCAACAAATTCTGGCCAATAATTGGAACATTCTGGACGAAAACGAAGGTGATTGGAAGAGTCATGCCACCGCTATAGCTCAATCTATTGATTTGATCAAACGCCGCTTGCAGTGGGAAAAATTGAAGGTGAGGTTGGATATGTTATCATTCCAGCTGGGTAAGGAGGACCTTTGGGATGATCCGGTGCACGCAGGTAAAATAAGCCGAGAGCATGGTTCGCTCCTGGGGAAAATGAAAGAAGTGAATGCATTGGAACAAGAATTACTTGAGCATATTGACATGATAAAGCTTGCCCGCGAAGAGAATGATGCGGATTTGGAATTGGAATCATTGAAAGTGTTGCTTAACATGAGAAGAGATGCAAAAGAGAAAGAGCTAGAGGCGTTGCTTGCTGGAGAGCAAGATTCTTGTTCTTGTTACATTGAGGTTCAAGCTGGGGCTGGAGGTACGGAAAGTATGGACTGGGCATCAATGGTCATGCAGATGTATAAGTCATGGGCACAGCGGCATGGATATAAAGTAACTTTAATGGATGAAATGCCTGGTGAGATTGCAGGAATCAAGCGAGCTACCATTAAAGTAGATGGTGAGTTTGCATTTGGATATGCCAAAGCAGAAATAGGTGTGCACAGGCTGGTGCGCATATCACCTTTTGATAGCAATAAGCGACGACATACTTCATTTGCTGCTGTGGCAGTGATTCCAATCCTAGGTGATGGATCTACCCATGTACAGATTAATGAATCTGATCTTCGAATCGAACGATTTCGGGCTGGTGGTCCTGGTGGCCAGCATGCTAACACAACTGAGAGCGCTGTAAGAATAGTTCATATTCCCACAGGAGTTACAGCAACTTGTCAGAATGAAAGATCGCAGCATCAGAACAAGGCTTCAGCCATGGCTGTGCTTCAGTCAAGGTTAGACCAACTGGAGATGGCACGCCAAGCACAGTTGAATGCACAACATACACAGTCTCTCACTGACATAACGTGGGGCAGTCAGATTCGCAGTTATGTTCTCCATCCTTACCGTATGGTGAAAGATCTTAGAACTAACTATGAGGTTTCAGACCCTGACTCCGTCCTTGAGGGCGATCTAGACGGATTCATCTTTAGCTATCTATCAGCTTCTTTGGATAAAGATAATGATGCTTAA 1431 0.4584 MSRLLRKALRTKALSLFLHKHVGNSFESHHTLAYSSWFWCRQSSHSLPHKPTPCFASNSIPSFSFSNALLQIRFWASEAAASEPSTSDGLTVQQILANNWNILDENEGDWKSHATAIAQSIDLIKRRLQWEKLKVRLDMLSFQLGKEDLWDDPVHAGKISREHGSLLGKMKEVNALEQELLEHIDMIKLAREENDADLELESLKVLLNMRRDAKEKELEALLAGEQDSCSCYIEVQAGAGGTESMDWASMVMQMYKSWAQRHGYKVTLMDEMPGEIAGIKRATIKVDGEFAFGYAKAEIGVHRLVRISPFDSNKRRHTSFAAVAVIPILGDGSTHVQINESDLRIERFRAGGPGGQHANTTESAVRIVHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEMARQAQLNAQHTQSLTDITWGSQIRSYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFIFSYLSASLDKDNDA 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01920 476 Hamap Peptide chain release factor 2 [prfB]. 106 470 IPR004374 GO:0005737|GO:0006415|GO:0016149
Vimu6g01920 476 Pfam PCRF domain 135 323 IPR005139 GO:0006415
Vimu6g01920 476 Gene3D Release factor 109 219 - -
Vimu6g01920 476 SMART PCRF_a_2 188 298 IPR005139 GO:0006415
Vimu6g01920 476 SUPERFAMILY Release factor 134 469 IPR045853 -
Vimu6g01920 476 Pfam RF-1 domain 335 442 IPR000352 GO:0003747|GO:0006415
Vimu6g01920 476 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 107 467 - -
Vimu6g01920 476 Gene3D - 329 425 - -
Vimu6g01920 476 FunFam Peptide chain release factor 1 332 425 - -
Vimu6g01920 476 NCBIfam peptide chain release factor 2 116 466 IPR004374 GO:0005737|GO:0006415|GO:0016149
Vimu6g01920 476 Coils Coil 173 193 - -
Vimu6g01920 476 Gene3D - 233 462 - -
Vimu6g01920 476 Coils Coil 392 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01920 Vimu-Chr6 17295959 17298734 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01920 K02836 - gmx:100797427 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01920 6 17295959 17298734 Vimu6g01920 6 17295959 17298734 ECH