Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01916 ATGTGGAACTCCACTACGAGGATGATGATGGCCGTTGCAGCCGTAACGCTCATGATTTTTCTCTCATTGGCGTCAGCCGACGACGTCGTTGCACTCACCCAGAACACCTTCGAAAACGAGGTTGGCAAGGATCGTGCGGCTCTCGTCGAGTTTTACGCCCCCTGGTGTGGACATTGTAAAAAGCTTGCCCCGGAGTACGAACAACTCGGAACGAGTTTCAGGAAAACGAAGTCGGTTTTGATTGCGAAGGTGGATTGTGATGAACATAAAAGCGTTTGCAGTAAATACGGGGTTTCTGGCTACCCTACCATTCAATTTTTTCCCAAGGGATCTCTACAGCCAAAAAAGTATGAAGGTGCACGGACTGCTGAAGCCCTTGCTGCGTTTGTGAACCTTGAAGCAGGTAGTAATGTGAAGATAGCTTCTGCTCCATCCAGCGTGGTAATTCTCTCCCCAGATAACTTTGATGAGGTTGTCTTGGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATGGTGTGGTCACTGCAAGGCCCTTGCCACTACTTATGAAAAGGTTGCTGCAGCATTTAACCTGGATGAAGAAGTAGTTATAGCCAATGTTGATGCTGACAAGTATAAGAATTTGGCTGAGAAATATGGTGTTACTGGCTACCCTACGCTGAAGTTTTTCCCTAAGAGCAATAAAGCTGGTGAAGATTATAGTGGTGGTCGTAGTTTGGATGATTTTGTAGCCTTCATCAATGAGAAATGTGGTACATACCGTGATGGGAAAGGGCAGCTTAGTTCTAAAGCTGGTATTGTAGAATCTCTGGATGGCTTGGTGAAGGAGTTTGTGAGTGCTGATGATAATGACAAGAAGGCAGTATATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTCAAGGGTTCTGCTGCCAGATATGGCAACCTCTACTTAAAACTTGCCAAGAAGAGTATGGAAAAGGGTACGGACTATGCAAAAAATGAAATTCTTCGTCTAGACCGCATGCTTGAGAAGTCAATCAGTCCAGCAAAAGCAGATGAATTCACTCTGAAGAAGAACATCTTATCAACGTTTGCTTGA 1089 0.45 MWNSTTRMMMAVAAVTLMIFLSLASADDVVALTQNTFENEVGKDRAALVEFYAPWCGHCKKLAPEYEQLGTSFRKTKSVLIAKVDCDEHKSVCSKYGVSGYPTIQFFPKGSLQPKKYEGARTAEALAAFVNLEAGSNVKIASAPSSVVILSPDNFDEVVLDETKDVLVEFYAPWCGHCKALATTYEKVAAAFNLDEEVVIANVDADKYKNLAEKYGVTGYPTLKFFPKSNKAGEDYSGGRSLDDFVAFINEKCGTYRDGKGQLSSKAGIVESLDGLVKEFVSADDNDKKAVYSRLEEEVKKLKGSAARYGNLYLKLAKKSMEKGTDYAKNEILRLDRMLEKSISPAKADEFTLKKNILSTFA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01916 362 CDD ERp29c 270 361 IPR011679 GO:0005783
Vimu6g01916 362 PRINTS Thioredoxin family signature 216 227 - -
Vimu6g01916 362 PRINTS Thioredoxin family signature 47 55 - -
Vimu6g01916 362 PRINTS Thioredoxin family signature 55 64 - -
Vimu6g01916 362 FunFam Protein disulfide-isomerase A6 homolog 22 139 - -
Vimu6g01916 362 Gene3D Glutaredoxin 138 264 - -
Vimu6g01916 362 Gene3D - 266 362 IPR036356 -
Vimu6g01916 362 FunFam Protein disulfide-isomerase A6 homolog 140 259 - -
Vimu6g01916 362 CDD PDI_a_ERp38 146 249 - -
Vimu6g01916 362 SUPERFAMILY Thioredoxin-like 27 131 IPR036249 -
Vimu6g01916 362 ProSiteProfiles Thioredoxin domain profile. 137 254 IPR013766 -
Vimu6g01916 362 ProSiteProfiles Thioredoxin domain profile. 12 135 IPR013766 -
Vimu6g01916 362 Pfam Thioredoxin 147 250 IPR013766 -
Vimu6g01916 362 Pfam Thioredoxin 29 131 IPR013766 -
Vimu6g01916 362 SUPERFAMILY ERP29 C domain-like 267 361 IPR036356 -
Vimu6g01916 362 CDD PDI_a_ERp38 28 130 - -
Vimu6g01916 362 SUPERFAMILY Thioredoxin-like 144 256 IPR036249 -
Vimu6g01916 362 Coils Coil 292 312 - -
Vimu6g01916 362 ProSitePatterns Thioredoxin family active site. 167 185 IPR017937 -
Vimu6g01916 362 Pfam Endoplasmic reticulum protein ERp29, C-terminal domain 268 361 IPR011679 GO:0005783
Vimu6g01916 362 Gene3D Glutaredoxin 22 137 - -
Vimu6g01916 362 ProSitePatterns Thioredoxin family active site. 48 66 IPR017937 -
Vimu6g01916 362 PANTHER PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED 142 349 - -
Vimu6g01916 362 NCBIfam protein disulfide-isomerase domain 32 131 IPR005788 GO:0003756
Vimu6g01916 362 NCBIfam protein disulfide-isomerase domain 151 252 IPR005788 GO:0003756
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01916 Vimu-Chr6 17272218 17277930 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01916 K09584 - gmx:100796355 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01916 6 17272218 17277930 Vimu6g01916 6 17272218 17277930 ECH