Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01895 ATGACTTCTTTGAGCCGAGAATTAGTGTTTCTGATACTCCAATTTTTGGAGGAGGAGAAGTTCAAGGAGTCGGTGCACAGGCTTGAGAAAGAATCTGGGTTTTTCTTCAATATGAAGTACTTTGAGGAAAAAGTACAGGCTGGTGAATGGGAAGAAGTTGAAAAGTACTTAAGAGGGTTTACTAAAGTTGACGATAATAGATACTCCATGAAAATATTCTTTGAAATCAGGAAGCAGAAATATCTTGAAGCACTTGATAGGCAAGACAAGGCAAAGGCTGTTGAGATATTAGTGGGTGATTTAAAAGTTTTCTCCACGTTCAATGAGGAACTATACAAAGAAATCACCCAACTTTTAACTCTAAGTAATTTCAGGGAGAATGAGCAATTGTCCAAGTATGGTGACACCAAAACTGCTCGAGGGATTATGTTGATAGAGCTAAAAAAGCTAATAGAGGCAAATCCTCTTTTCCGTGACAAACTTGTCTTCCCTACCCTTCGGTCATCAAGATTGCGGACGTTGATCAATCAAAGTTTAAACTGGCAGCACCAACTTTGCAAAAACCCTAGGCCAAACCCAGATATAAAGACTTTATTCACCGACCACACATGTACACCTCCTAACGGTCCTCTAGCCCCTACTCCTGTCAATCTTCCAATTGCTGCCGTTGCAAAGCCTTCAGCTTATACTTCAATTGGAGCTCATGGTCCCTTTCCCCCTGCTGCAGCAACTGCTAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGCTTCATCATCTGTCCAAGCAGCTGTTGTCACAGCATCAACCATGCCTGTCCCACAGAATCAAGCTTCTATCTTGAAGCATCCAAGAACACCAACAACTCCTGGCATGGTTGACTATCAGAATGCTGATCATGAGCAGTTAATGAAAAGACTCCGGCCTGCTCCTTCTATGGAGGAGGTTTCCTATCCTGCCTCTCGACAAGCCTCTTGGTCATTGGATGATCTACCAAGAACAGTGGCAGTGACATTGCATCAAGGATACTCTGTGACAAGCATGGACTTTCATCCTTCACATCAAACCTTACTTCTCGTGGGTTCTACTAATGGGGAAATTACACTTTGGGAACTGGGGTTGCGAGACAGGTTGGTCACAAAGCCATTCAAGATATGGGATATCTCAGCGTGCTCATTGCCATTTCAGGCAGCTATGGCCAAAGATGCTTCTATTTCTGTCAGTCGTGTCACATGGAGCCTGGATGGAAATTTTGTGGGTGTTGCATTTACCAAACATTTGATTCACTTGTATTCTTACATTGGATCAAATGAGCTGGTTCAGCGTATGGAGGTTGATGCCCATATTGGTGGTGTTAATGACTTGGCATTTGCTCATCCAAATAAACAACTCTGTATTGTGACTTGTGGAGATGATAAGTTGATAAAGGTGTGGGATTTGACTGGACGGAGACTGTTTAACTTTGAGGGTCATGAGGCACCTGTATATTCTATCTGCCCTCATCACAAGGAGAACATTCAGTTTGTATTTTCAACTGCCATTGATGGCAAAATAAAAGCCTGGTTGTATGATAATGCGGGTTCTAGGGTTGACTATGATGCCCCAGGCCATTGGTGTACACGTTGCTCTATAGTGCTGATGGAAGTAGATGGCGAGTCATTTCTTGTTGAATGGAATGAAAGTGAAGGAGCTATTAAAAGAACATACAATGGGTTCAGAAAGAAATCTGCTGGTGTTGTGCAGTTTGACACAACCCAAAATCGCTTCTTGGCTGCTGGTGAAGATGGCCAAATCAAATTTTGGGAGATGGACAGTATTAATCTTCTAACAAGCACTGATGCAGAGGGTGGATTACAGGCCCTTCCACTCTTGAGATTCAACAAGGAAGGAAGTCTTCTTGCTGTCACCACTGCAGACAATGGATTAAAAATTCTTGCTAATGTAAGTGGCCTTAGATCCTTGAGAACAGAAACTCCAGGATTTGAAGCATTGAGGTCACCCATAGACTCTGCTGCAATCAAGGCATCTGGCTCTTCTGCTGTTAATGTTAGTCCTGTCAACTGTAAAGTAGAAAGGAGCTCACCTGTCAGGCCTTCTCCAATTCTTAAAGGAGGAGTTGATCCCACAGGTCGAAATGCAGAGAAACCTATAACTGTGGAAGAGGGAATTGATAGAGCTAAACCATGGCAGCTGTCTGAAATTGTTGATCCTGTTCAATGTCAGTCAGTTACCATGCCTGACAGTACAGATTCTTCCAGCAAGGTTGTTAGACTTTTGTATACGAACTCTGGTGCTGGTCTATTGGCACTTGGTTCAAATGGTGTTCAGAGGCTGTGGAAGTGGGCTCGTAGTGAACAAAATCTCAATGGGAAGGCTACTGCCAGCGTTGTTCCACTGCATTGGCAACCTCACAGTGGTCTTCTTATGACTAATGATGTCTCGGGTGTCAACCTTGATGAAGCTGTTCCTTGCATTGCACTCTCAAAGAATGACTCATATGTTTTGTCTGCCTGTGGTGGAAAGGTAATGACAACATTCATGCCACCACCCCCTGCCTCTACCTTTTTGGCTTTCCACCCTCAAGATAATAACATCATAGCCATTGGGATGGAGGATTCAACAATTTACATTTATAATGTTAGAGTCGATGAGGTGAAATCCAAATTGAAGGGTCACCAAAAGCGAATTACTGGTTTTGCCTTTTCAACCTGCCTTAACATTCTGGTTTCATCTGGTGCTGATGCTCAACTCTGTGTATGGAACATTGATACATGGGAGAAAAGAAAATCAGTTCCACTACAACTGCCCACAGGAAAGGCTCCTGTAGGTGATACTCGTGTGCAGTTCCATTTAGACCAAATTCGGTTACTGGTAGCCCACGAGACTCAATTGGCAATATATGACGCCTCTAAAATGGACCGGATTCGGCAGTGGGTTCCTCAAGATGTTCTGGCTGCTCCCATATCATATGCTGCTTATTCCTGCAATAGTCAGTTAATCTATGCTACATTTTGCGATGGAAACACTGGGGTTTTTGATGCTGACAGCTTGAGACTGAGATGTCGTATAGCACTATCCACATACTTTTCACCTGCGGCTTTAAGTGTGAATCAATCTGTGTATCCTGTTGTTGTTGCGGCTCATCCAGCAGAGGCCAATCAATTTGCCGTTGGATTGACAGATGGGTCCGTGAAAGTAATAGAGCCCAGTGAATCAGAAGGTAAATGGGGAACCAGTCCACCTATAGATAATGGAATAGTAAACGTTGTTTGTCTCATGAAGCGCAACGACGTTAAAGAAAGTCATTTGTTATATGTGAGCGTGAGCACAAATGAGAATTGTGGAGACGAAAGGTACAAAGTTTATTGTAATGATGGAAAATTAGAGTTTCTTTCTGCTACAGGAATTTACTATAAGATCCTCAGCATTGATCCGAGTGCTAATAAACTTGTGATTATGCCACCTCCTATTTTGAAGAACACTTGTTATTCTTTGGATCTTTTAATGGGAGGTTTGTTGCTTGATGAAAGCTTACCTTTCAATATATCTACACAAAATACAGTGTTGTTGTTTAATTGCACTAGCAATATCCTTCAATCTCCTCTCAATTGCACTTCAAATAGTATTTGTAGACAGTATGAGAAAAAGGTAGAGGAAGGATTTGGTTGTATGAACACTCTTTGTTGTCATTACTTAAAGGATTCAGCTATGAATTCTCATAAGATCAGAGTCAGGATTGGAAGTTGCACAGCTTATACTTGTTTGGTAGGTTTCACACCTGATGACCCTCTTCAAACTTGGAATTATGGGATTGAGTTACAATGGATGTCTCCTAATTGA 3846 0.423 MTSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNMKYFEEKVQAGEWEEVEKYLRGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLVFPTLRSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCTPPNGPLAPTPVNLPIAAVAKPSAYTSIGAHGPFPPAAATANANALAGWMANASASSSVQAAVVTASTMPVPQNQASILKHPRTPTTPGMVDYQNADHEQLMKRLRPAPSMEEVSYPASRQASWSLDDLPRTVAVTLHQGYSVTSMDFHPSHQTLLLVGSTNGEITLWELGLRDRLVTKPFKIWDISACSLPFQAAMAKDASISVSRVTWSLDGNFVGVAFTKHLIHLYSYIGSNELVQRMEVDAHIGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLTGRRLFNFEGHEAPVYSICPHHKENIQFVFSTAIDGKIKAWLYDNAGSRVDYDAPGHWCTRCSIVLMEVDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDGQIKFWEMDSINLLTSTDAEGGLQALPLLRFNKEGSLLAVTTADNGLKILANVSGLRSLRTETPGFEALRSPIDSAAIKASGSSAVNVSPVNCKVERSSPVRPSPILKGGVDPTGRNAEKPITVEEGIDRAKPWQLSEIVDPVQCQSVTMPDSTDSSSKVVRLLYTNSGAGLLALGSNGVQRLWKWARSEQNLNGKATASVVPLHWQPHSGLLMTNDVSGVNLDEAVPCIALSKNDSYVLSACGGKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIYIYNVRVDEVKSKLKGHQKRITGFAFSTCLNILVSSGADAQLCVWNIDTWEKRKSVPLQLPTGKAPVGDTRVQFHLDQIRLLVAHETQLAIYDASKMDRIRQWVPQDVLAAPISYAAYSCNSQLIYATFCDGNTGVFDADSLRLRCRIALSTYFSPAALSVNQSVYPVVVAAHPAEANQFAVGLTDGSVKVIEPSESEGKWGTSPPIDNGIVNVVCLMKRNDVKESHLLYVSVSTNENCGDERYKVYCNDGKLEFLSATGIYYKILSIDPSANKLVIMPPPILKNTCYSLDLLMGGLLLDESLPFNISTQNTVLLFNCTSNILQSPLNCTSNSICRQYEKKVEEGFGCMNTLCCHYLKDSAMNSHKIRVRIGSCTAYTCLVGFTPDDPLQTWNYGIELQWMSPN 1281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01895 1281 ProSitePatterns Trp-Asp (WD) repeats signature. 468 482 IPR019775 -
Vimu6g01895 1281 SMART ctlh 34 92 IPR006595 -
Vimu6g01895 1281 Gene3D - 546 683 IPR015943 GO:0005515
Vimu6g01895 1281 ProSiteProfiles Trp-Asp (WD) repeats profile. 447 482 IPR001680 GO:0005515
Vimu6g01895 1281 Pfam WD domain, G-beta repeat 447 481 IPR001680 GO:0005515
Vimu6g01895 1281 Pfam WD domain, G-beta repeat 890 923 IPR001680 GO:0005515
Vimu6g01895 1281 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 345 937 IPR011047 -
Vimu6g01895 1281 ProSiteProfiles Trp-Asp (WD) repeats profile. 582 613 IPR001680 GO:0005515
Vimu6g01895 1281 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1087 IPR027728 GO:0006355
Vimu6g01895 1281 SMART WD40_4 979 1015 IPR001680 GO:0005515
Vimu6g01895 1281 SMART WD40_4 884 923 IPR001680 GO:0005515
Vimu6g01895 1281 SMART WD40_4 438 481 IPR001680 GO:0005515
Vimu6g01895 1281 SMART WD40_4 483 524 IPR001680 GO:0005515
Vimu6g01895 1281 SMART WD40_4 564 604 IPR001680 GO:0005515
Vimu6g01895 1281 SMART WD40_4 334 373 IPR001680 GO:0005515
Vimu6g01895 1281 SMART WD40_4 841 881 IPR001680 GO:0005515
Vimu6g01895 1281 Gene3D - 334 542 IPR015943 GO:0005515
Vimu6g01895 1281 ProSitePatterns Trp-Asp (WD) repeats signature. 910 924 IPR019775 -
Vimu6g01895 1281 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Vimu6g01895 1281 SMART Lish 4 36 IPR006594 GO:0005515
Vimu6g01895 1281 MobiDBLite consensus disorder prediction 693 715 - -
Vimu6g01895 1281 SUPERFAMILY WD40 repeat-like 764 1092 IPR036322 GO:0005515
Vimu6g01895 1281 Gene3D - 818 1100 IPR015943 GO:0005515
Vimu6g01895 1281 ProSiteProfiles Trp-Asp (WD) repeats profile. 891 932 IPR001680 GO:0005515
Vimu6g01895 1281 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 891 926 - -
Vimu6g01895 1281 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01895 Vimu-Chr6 17141162 17152292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01895 1110 1280 Receptor kinase-like Gene Family AT5G02070 37.079 1.30e-28 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01895 - - gmx:100808421 1962.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01895 6 17141162 17152292 Vimu6g01895 6 17141162 17152292 ECH