Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01890 ATGAAGCTCGACGTAGATGTGTTGAGATATCTCTACAAAGATGATTTTAGGGTTCTCACCGCCGTTGAATTGGGCATGCGGAATCATGAAATCGTACCCACGGAACTCATCGATCGAATTGCGCGTCTCAAGCATGGAGGCACGTACAAAGTTTTGAAGAATTTGCTCAAGCACAAATTGCTGCATCACGACTCTTCTAAATATGATGGATTCCGCCTTACCTATCTTGGTTATGATTTTCTTGCCATTAAAACTATGGTGAACAAAGGAGTGTTTGTTGCTGTTGGTCGCCAAATTGGTGTTGGAAAGGAATCTGATATATTTGAGGTTGCCCGTGAAGATGGAACTGTTCTAGCCATGAAGTTGCATAGACTTGGTAGAGTCTCTTTTAGAGCTGTCAAATCTAAGCGTGACTACTTGAGACATCGAAGTAGTTATAATTGGCTCTATTTGTCTCGCCTTGCTGCCCTTAAAGAATTTGCTTTCATGAAGGCTCTGGAAACCCATGGCTTTCCTGTTCCAAATGCTGTAGAGCACAATAGACATTGTGTAGTCATGTCACTTGTCCAAGGTTATCCTCTTGTTCAGGTGAAGCAGTTGCAAAATCCAGAGACAGTTTTTGAGACAATCGTTGGTTTAGTTGTTCGGTTGGCTGAGCGTGGCCTTATTCATTGTGATTTCAATGAATTCAATATCATGATTGACGATGATGAAAAAATTACCATGATTGATTTCCCTCAAATGGTATCCGTGTCACATCGTAATGCACAGATGTACTTTGACCGTGATGTTGAGTGCATCTTTAAGTTTTTCAGGAAAAGGTTCAATCTTTCTTTTGAAGAAAGCTTAGATGATATCGACGGTTCTGATGATGGGAGAGATGGAGCTGGAAAACCCTGTTTTTCTGCGATAGAAAGAAGTGCTGGTTTTCTAGATAGGGAACTTGCTGCCAGTGGCTTTACTAGAAAGGACGAAGAAGATATTCAAAGGTTCATTGAAGGAAAGGCAGAGAGTGATATGAATTCAGACGGTGAAGAGGTTGACTTAGTTGAAGACCTGGATGAAGCAGGCACTATTGATGGTAATTCTTCAGACTTGTTGGAACAGATACATGCTGAAAAACTTAGGAACAATGCTAAACATTCTGCACTAGAGATGTTGTGTAAGTCTAATTCTGCAATGTTGGTTGAAGGATTGTTGTTTTGTTTTAATCAGAACGAGGGATATGAAAGTCAGTGGATAGAGAAGACTTGTGAAGCACGCGAAAGCAGTGGATCTGAAAAGGAAGATGCAAATGACAATGAGGAAAACAATGAAGAAGCCACGGAAAATGAAGCTGAACTCGTGAAGAGCTTGAATAAGCAAAGACAACGTGCTGTGGCAGCAGTTCGTAAGGGACATAAGACTGCTGGAGGCAGAAATTCCTACAAAGACAAAGGTGGTAGGTCATCTCACAATTCTAAAATCCAGAAACAGTTGAGCAGCTGGGGAAATATGTAG 1500 0.4113 MKLDVDVLRYLYKDDFRVLTAVELGMRNHEIVPTELIDRIARLKHGGTYKVLKNLLKHKLLHHDSSKYDGFRLTYLGYDFLAIKTMVNKGVFVAVGRQIGVGKESDIFEVAREDGTVLAMKLHRLGRVSFRAVKSKRDYLRHRSSYNWLYLSRLAALKEFAFMKALETHGFPVPNAVEHNRHCVVMSLVQGYPLVQVKQLQNPETVFETIVGLVVRLAERGLIHCDFNEFNIMIDDDEKITMIDFPQMVSVSHRNAQMYFDRDVECIFKFFRKRFNLSFEESLDDIDGSDDGRDGAGKPCFSAIERSAGFLDRELAASGFTRKDEEDIQRFIEGKAESDMNSDGEEVDLVEDLDEAGTIDGNSSDLLEQIHAEKLRNNAKHSALEMLCKSNSAMLVEGLLFCFNQNEGYESQWIEKTCEARESSGSEKEDANDNEENNEEATENEAELVKSLNKQRQRAVAAVRKGHKTAGGRNSYKDKGGRSSHNSKIQKQLSSWGNM 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01890 499 Gene3D - 1 90 IPR036388 -
Vimu6g01890 499 SMART rio_2 64 288 IPR000687 GO:0004674|GO:0005524
Vimu6g01890 499 CDD RIO2_C 94 274 IPR030484 GO:0004672
Vimu6g01890 499 FunFam Serine/threonine-protein kinase RIO2 92 191 - -
Vimu6g01890 499 MobiDBLite consensus disorder prediction 471 485 - -
Vimu6g01890 499 Pfam Rio2, N-terminal 8 89 IPR015285 GO:0004674|GO:0005524|GO:0006468
Vimu6g01890 499 FunFam Serine/threonine-protein kinase RIO2 1 91 - -
Vimu6g01890 499 SUPERFAMILY "Winged helix" DNA-binding domain 5 90 IPR036390 -
Vimu6g01890 499 PANTHER SER/THR-PROTEIN KINASE RIO2 1 489 - -
Vimu6g01890 499 Pfam RIO1 family 106 279 - -
Vimu6g01890 499 SUPERFAMILY Protein kinase-like (PK-like) 95 271 IPR011009 -
Vimu6g01890 499 Gene3D Transferase(Phosphotransferase) domain 1 192 339 - -
Vimu6g01890 499 FunFam Serine/threonine-protein kinase rio2 192 339 - -
Vimu6g01890 499 MobiDBLite consensus disorder prediction 420 499 - -
Vimu6g01890 499 Coils Coil 431 458 - -
Vimu6g01890 499 Gene3D Phosphorylase Kinase; domain 1 93 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01890 Vimu-Chr6 17105676 17110581 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01890 K07179 - gmx:100797607 756.518