Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01875 ATGCATTCACTGGGGTATCGCGCGAACGCGTTGCTGACCTTTGCCGTGACCATTCTGGCTCTTATGTGCTGCATGGCCTCTCTCTCCGACAACTTCAATTCTCCCTCTCCCTCTGCCCAAGTCCAGGTCTTGAACATCAACTGGTTTCAGAAGCAGCCCAACGCCAATGACGAGATCAGCATGACATTGAACATATCAGCAGATTTGCAGTCCCTTTTTACATGGAACACAAAACAGGTTTTTGTTTTTCTTGCTGCCGAGTATGAAACTCCTAAGCATTCCTTGAATCAGATATCTCTATGGGATGGTATCATACCCTCTAAAGAGCATGCCAAGTTTTGGATTCATACATCAAATAAGTACCGCTTCATTGACCAGGGAAGCAATTTGCGCGGCAAAGAATATAACCTGACTATTCATTGGCATGTTATGCCTAAGACTGGCAAAATGTTTGCAGATAAAATAGTCATGCCAGGTTTCAGATTGCCAGAGGAATATAGATGA 504 0.4425 MHSLGYRANALLTFAVTILALMCCMASLSDNFNSPSPSAQVQVLNINWFQKQPNANDEISMTLNISADLQSLFTWNTKQVFVFLAAEYETPKHSLNQISLWDGIIPSKEHAKFWIHTSNKYRFIDQGSNLRGKEYNLTIHWHVMPKTGKMFADKIVMPGFRLPEEYR 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01875 167 PANTHER MICROSOMAL SIGNAL PEPTIDASE 23 KD SUBUNIT SPC22/23 1 167 IPR007653 GO:0005787|GO:0006465|GO:0016020
Vimu6g01875 167 PIRSF SPC3 1 167 IPR007653 GO:0005787|GO:0006465|GO:0016020
Vimu6g01875 167 Pfam Signal peptidase subunit 1 165 IPR007653 GO:0005787|GO:0006465|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01875 Vimu-Chr6 16977037 16982330 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01875 K12948 - gmx:100306631 329.717