Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01870 ATGTTCCTGCGTGTGGCTGCAGCAAATTTGCTGAAAAAACTTCGATTTCCTGCTTCTTATGCCTCCCCTGCCTCCACAGTAACCACCATAAATGAACTTTCCGTTAAGCTCAAACTTCCCCGTTGGTACCAAACTGGTGGACATGGTTGGAGGATAAATCTTAGGGATCCCTGTTTATGGATTGTTATATCTGGACATGTAGCAATGACTTTAGGAATTAGTGCCAACGCCACATTTGCAGAAAATGCGACAACTGAAGCATCTTCTAACAATGACCTGGGAGATGACTTAGTTGGCTTGAGAAAGATTGAGGATGGTTCTGTCGTATCAAACATACATACAGCAAAATGGAGAGTCTTTACTGATAAAGCGAGAGAATTTTTTCAGCAGGCAGGATGTTTCTTTGGAAAACTAGATGAAGCTGAAAAACTCTTCCTTTCTGCTATACAAGAAGCTAAAGAAGGTTTTGGCGAGCAAGATCCGCATGTTGCTTCTGCATGCAACAATCTGGTCATTTTACTTGCAATTGATATCGTTACTTTCTTAATTGATTATATTTTTGATAAAGGAGTTTTACAGGAGGGACAAAAGGCAGAATTTTACAGGGTCAAAAAGGCATTTGACAAAGCAGAGCCATTGTATTTGGAAGCCATCAATATATTAGAGAAATCTTTTGGTCCTGATGATGTACGGGTTGGAGTTGCTGCTCACAACCTTGGGCAGTTCTACCTTGGACAGAAGAAATTGGAAGAAGCTCGGGTTAACTACGAGATTAAAAGGCGTGTTCTGGGTTATGGCCATTCAGAATGTTCAGATACAATGTTTCATCTAGGAGTGGTGTTGTATCTTCAAGGAAAAGAAAGGGATGCTGAGGTCCTTATTAAGGACTCTATAAGAATGCTGGAGGAAGGTGGTGAAGGGGAGTCATCTGTATGCATTAGAAGACTACGTTACCTCTCACAGATATATATGAAGTCACATCAAGTTGCTGAAGCTGAGATGGTTCAGAGAAAGATCCTGCATGTTGTGGAATTGTCAAAGGGATGGAATTCCTTGGCTACAGTTATTGCAGCTGAATCTCTGGCTTTGACCCTGCTAGCATTTGGCAATACAAAAGATTCGAAAGATCTTCTTGAAAGATGTCTTAATGCCAGGAAGGACTTGCTTCCCAGTGATCATATTCAGATTGGTGCAAACCTACTTCATCTAGCAAGAGTGGCAATGCTTGACTGCGGTCAACATAAAATGTTGGATGTTTCTAAAGCTGAAGCTGAGCTTGACATGGCAAAGAATCATTTGCATAATTCCATAAGGATTGCACGTGAATGTTTACGGAAGGTATCAAAACAAAAGGACAAGTTAAAGAGATACAGTGAGCCCGGGGATGCTAGAAAGGAAGGCCAAGCAGCACTGGCCATATTGTTGCAATCACTCAATACATTGTCATCAGTAGAGCTAGAAAAGCAAGAATTGCAGAAGATTCAGGTTAGGAAGGAAATATTAACCTCGAGGCTCAGGAGGCACTTCTTCAATGCATTTCTGCTTACAAAGAGCTTGGGCTGGGCTGTGGCTGGGGTTGGGCTGGGGCTGGGGCTGGGCTGGGCTGGGGCTGGGCTGTGGCTGTGGCTGTGGCTGGGGTTGGGCTGTGACTGGGCTGTGGCTGTGGCTGGGCTGTGGCTGGGGCTGGGACTGTGGCTGGGGCTGGGACTGTGGCTGGGGTTGGGCTGTGGCTGGGCTGGGGCTGGGCTGGGGTTGGGGTTGGGGCTGGGCTGTGGCTGGGCTGTGGCTGGGGCTGGGACTGGGCTGGGGCTGTGCTGGATGGGCTGGGCTGGGGCTGGGGCTGGGGCTGGGTTGTGGCTGTGGCTGGGGCTGGGCTGGGGCTGGGGCTGGGCTGTGGCTGTGGCTGGGGCTGGGCTGTGGTTGGGCTGTGGCTGGGGCTGGGCTGTGGTTGGGCTGTGGCTGTGGCTGGGCTGTAGCTGGGGCTGGGCTGCAGCTGTGGCTTTTGTATCAGAGAGGTCAATTGCTGATACCCCTGAAATAAAGAACGAGTATATTTCATGTTTAAAGCGCGCACAAAATTTGCTTGGACATAAAATTCATTAG 2103 0.4765 MFLRVAAANLLKKLRFPASYASPASTVTTINELSVKLKLPRWYQTGGHGWRINLRDPCLWIVISGHVAMTLGISANATFAENATTEASSNNDLGDDLVGLRKIEDGSVVSNIHTAKWRVFTDKAREFFQQAGCFFGKLDEAEKLFLSAIQEAKEGFGEQDPHVASACNNLVILLAIDIVTFLIDYIFDKGVLQEGQKAEFYRVKKAFDKAEPLYLEAINILEKSFGPDDVRVGVAAHNLGQFYLGQKKLEEARVNYEIKRRVLGYGHSECSDTMFHLGVVLYLQGKERDAEVLIKDSIRMLEEGGEGESSVCIRRLRYLSQIYMKSHQVAEAEMVQRKILHVVELSKGWNSLATVIAAESLALTLLAFGNTKDSKDLLERCLNARKDLLPSDHIQIGANLLHLARVAMLDCGQHKMLDVSKAEAELDMAKNHLHNSIRIARECLRKVSKQKDKLKRYSEPGDARKEGQAALAILLQSLNTLSSVELEKQELQKIQVRKEILTSRLRRHFFNAFLLTKSLGWAVAGVGLGLGLGWAGAGLWLWLWLGLGCDWAVAVAGLWLGLGLWLGLGLWLGLGCGWAGAGLGLGLGLGCGWAVAGAGTGLGLCWMGWAGAGAGAGLWLWLGLGWGWGWAVAVAGAGLWLGCGWGWAVVGLWLWLGCSWGWAAAVAFVSERSIADTPEIKNEYISCLKRAQNLLGHKIH 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01870 700 Pfam Tetratricopeptide repeat 196 256 - -
Vimu6g01870 700 SUPERFAMILY TPR-like 135 290 IPR011990 GO:0005515
Vimu6g01870 700 SUPERFAMILY TPR-like 268 388 IPR011990 GO:0005515
Vimu6g01870 700 Gene3D Tetratricopeptide repeat domain 312 509 IPR011990 GO:0005515
Vimu6g01870 700 Coils Coil 484 504 - -
Vimu6g01870 700 Gene3D Tetratricopeptide repeat domain 129 311 IPR011990 GO:0005515
Vimu6g01870 700 Pfam Tetratricopeptide repeat 359 394 - -
Vimu6g01870 700 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 198 500 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01870 - - gmx:100813040 760.755