Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01857 ATGCAATATGGACTCGAATTTCCCTCTTGCTTGTGTCATTTTTCTGAATACTCAATTCATTCAAGGGCAAAGGAACTTCAGTTTTCAGTAGATTTCCATGCTCCTTCCATGGGGGAGGTTTGTGAATCTGGTTTCGTGTTGAAAATAACCTTTTGTGCTGGAAACTCCCTTTTAGAGTTCACTGTTAATAGTGGATATTTTAGTAGAGGGATGGGAAGTAACAATCACTTCATAATGGAAATAAGTATTGCAAGGCCTCATCTTGAAACACGGGGAGTATTCTTTTCAAATATTTCAAGAACAGTAGCATGGGAAAGCTCTAAGAAACCTCCATGCACTGTGGCTGCCTTAAGTTCTACACAGGACTTTCACAGACTGGCCTCTTCCTGTCAAGCTTTTACTTCGGTGTATCCTAAAAGGCATTTAATCTGTAGACCAAACTCCATGCCGATTAGTTTACAGGAATCTGCATCCAGTGGAGATAATTCACTTGAAGGTGAGAATCCATCTATAGACTCAGAAGAGGAGACTTTGGCACAACCACCTACCCGTGAACAGATAATGGCACTGCTTGCTGACGCACAGAGAGAGCAACTCACTAAGAAGCTTAGTGAAGCCAACCAGCAAAATCGGTTTCTAAAAAGACAGGATAATGCTTTTGTTTTGTTGCTGGTAAAACAAGTGGATAAAAAGGACAATGTGTTGAAAGTAAAGGAGGATGCATTGGTAAAATTCAAAAGTGAACTTGGAGCCATGGAGCTTGAAATTCAGGCTTTAGCTAGCCTAGCAGAAGAAATAGCTCAATGCGGTATTCCAGAAGGTTCAAGGAAGATCAATGGAAAGTACATTCATTCTCACCTTGTTGCTAGATTAGAAGAATATACTAATAAAACCTCACAGCATTGTGTTGTCAACTTGGCTTCTTTTGTGTCCTTATCGATGCAAATGCCTTGTTTTCCCTACATAGCTGTAGATGAAAAACTGAAGGAACAAATAAAGGATGTCGATGCGGCACAATCAAAGGAGGTTTCCGTGTTTTGGATTGGCATGGCTGAGAGCGTGCAAGTTATGGGAACCTTTGATGGCTGGAGCCAAGGAGAGCATCTTTCACCAGAATATAATGGTTCTTACACAAAGTTTTCAACAACATTGTTGCTCAGGCCAGGAAGCTATGAAATCAAATTCTTAGTAGATGGTGAATGGCAGCTGTCTCCAGAATTCCCCATTATTGGTGAAGGGTTGACGAAAAATAATTTGTTAGTTGTTGAGTAA 1272 0.4049 MQYGLEFPSCLCHFSEYSIHSRAKELQFSVDFHAPSMGEVCESGFVLKITFCAGNSLLEFTVNSGYFSRGMGSNNHFIMEISIARPHLETRGVFFSNISRTVAWESSKKPPCTVAALSSTQDFHRLASSCQAFTSVYPKRHLICRPNSMPISLQESASSGDNSLEGENPSIDSEEETLAQPPTREQIMALLADAQREQLTKKLSEANQQNRFLKRQDNAFVLLLVKQVDKKDNVLKVKEDALVKFKSELGAMELEIQALASLAEEIAQCGIPEGSRKINGKYIHSHLVARLEEYTNKTSQHCVVNLASFVSLSMQMPCFPYIAVDEKLKEQIKDVDAAQSKEVSVFWIGMAESVQVMGTFDGWSQGEHLSPEYNGSYTKFSTTLLLRPGSYEIKFLVDGEWQLSPEFPIIGEGLTKNNLLVVE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01857 423 Coils Coil 189 216 - -
Vimu6g01857 423 PANTHER PROTEIN PTST, CHLOROPLASTIC 89 423 - -
Vimu6g01857 423 Gene3D Immunoglobulins 333 422 IPR013783 -
Vimu6g01857 423 Pfam Glycogen recognition site of AMP-activated protein kinase 345 419 IPR032640 -
Vimu6g01857 423 CDD E_set_AMPKbeta_like_N 342 422 - -
Vimu6g01857 423 SUPERFAMILY E set domains 343 422 IPR014756 -
Vimu6g01857 423 MobiDBLite consensus disorder prediction 154 182 - -
Vimu6g01857 423 MobiDBLite consensus disorder prediction 154 177 - -
Vimu6g01857 423 FunFam Protein PTST, chloroplastic 335 423 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01857 - - vra:106758029 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01857 6 16752362 16759668 Vimu6g01857 6 16752362 16759668 ECH