Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01854 ATGGACCTAACATCACCAGTCCTCACTGCAACCATCAATGGAGGTCATTCACCACAACGAACTAGCTTCACACTTCAAGTCTCCTTCCCACTCAAGTTGTCGAAGGTTTTGCCGCATCCTGACATCGCCGAACTGTTGAAGGTTCTTCCACCATTGTCAAGTAACAGTGGAAGAACGAAGGAGAAGAGGGGGAGCAAAACGACTCCGTTGAGGCGGGAGCCGGAGGAGGACGCACCTGAGTTCCAGAAGGAGTCCATGGAGTTGCCGGCGGGGGGAGAGGGCGAGGAAGGACTGGACGCCGTGGACGCGCGAGGGAGAGGGTGGAGAAGAGGTCGGGGTGGGGAGAAGTTGGCGGGGAAGTTGTCGGTGACGAAGATGGTTTTGACGGCGAGGACGGTAGGGAGGCGGGCGTGGCGGGGAGGAGGAGGTCGGAGACGGGGAGGCGCTCGGAGACGACGTGATAGGAGAATAAGAGGAGATCCAGCGGAGGAAGGCGTTGCGTGGGACGAAGACTTAGAGGCCAATGCTGGTGCACTCACAAATTTTGAGGTCCTTGATTTCTTACGAGCTAAAGGAGCTTCAAAGGATCCAACAAGGGTTATTGCCAAAGTAGCGCAGTCTGAATACAAGGTTTATGATTATTTGGTTGACACTGCTGTCTCTAATCAAACAAGAGAGAGCATCAACGAGTTTTTGACTAGTATTAAACGGCATGACCTAGCAAAAGCCGAGGTTCTGAACATATTAAACATTAGGCCAACTGCTGACGTTGAATTATTCCCGATCATAGAGAGTTGTGAGGGACGTTTTCCAGTTGACGAGGTGACCTTTCCAGATGAAGAGGTGACCGAAATATTAGAGCTGGTGACAAGAACATTGCCGCCACCTTCCAGTATGAAGCAGGAAGAAATCACTAAGGGTGACGAAGAAACTGCTACACTGAAAAATGAAAACGACGAGGTTATTGAAGATCCCATGGACACAAGATAA 990 0.5101 MDLTSPVLTATINGGHSPQRTSFTLQVSFPLKLSKVLPHPDIAELLKVLPPLSSNSGRTKEKRGSKTTPLRREPEEDAPEFQKESMELPAGGEGEEGLDAVDARGRGWRRGRGGEKLAGKLSVTKMVLTARTVGRRAWRGGGGRRRGGARRRRDRRIRGDPAEEGVAWDEDLEANAGALTNFEVLDFLRAKGASKDPTRVIAKVAQSEYKVYDYLVDTAVSNQTRESINEFLTSIKRHDLAKAEVLNILNIRPTADVELFPIIESCEGRFPVDEVTFPDEEVTEILELVTRTLPPPSSMKQEEITKGDEETATLKNENDEVIEDPMDTR 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01854 329 MobiDBLite consensus disorder prediction 302 329 - -
Vimu6g01854 329 MobiDBLite consensus disorder prediction 292 329 - -
Vimu6g01854 329 MobiDBLite consensus disorder prediction 51 98 - -
Vimu6g01854 329 Pfam RNA polymerase Rpb4 178 291 IPR005574 GO:0006352|GO:0030880
Vimu6g01854 329 SMART rpol4neu2 171 296 IPR006590 -
Vimu6g01854 329 MobiDBLite consensus disorder prediction 138 153 - -
Vimu6g01854 329 PANTHER CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEIN 172 311 IPR038846 GO:0005666|GO:0006384
Vimu6g01854 329 MobiDBLite consensus disorder prediction 59 83 - -
Vimu6g01854 329 SUPERFAMILY HRDC-like 174 293 IPR010997 GO:0000166|GO:0044237
Vimu6g01854 329 FunFam RNA polymerase II, Rpb4, core protein 170 294 - -
Vimu6g01854 329 Gene3D - 170 294 IPR038324 -
Vimu6g01854 329 MobiDBLite consensus disorder prediction 137 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01854 Vimu-Chr6 16727463 16733277 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01854 K25304 - gmx:100789488 219.55