Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01853 ATGGACGACGAGGTGCGCAAGATCTTCAACAAGTTCGACAAGAACGGCGACGGGAAGATCTCGTGCGCGGAGCTGAGGGAGTTGATGGCTGCGCTGGGATCGAAAACTACCACGGAGGAGGTGCGACGCATGATGGCGGAGCTCGACCGCAACGGCGACGGCTACATTGATTTGAAGGAGTTCGGGGAGTTCCACTGCGGCGGAGGCGGCGACGGAAGGGAGCTCCGGGAGGCCTTCGAGCTGTACGATCTGGACAAGAACGGGCTGATCTCGGCGAAGGAGCTGCACTCCGTGATGCGGAGGCTGGGGGAGAAGTGCTCCCTCGGTGACTGCCGGAGAATGATCGGAAACGTGGATGCCGACGGCGACGGCAGCGTGAATTTCGAAGAGTTCAAGAAGATGATGACGCGCTCGTAG 417 0.6043 MDDEVRKIFNKFDKNGDGKISCAELRELMAALGSKTTTEEVRRMMAELDRNGDGYIDLKEFGEFHCGGGGDGRELREAFELYDLDKNGLISAKELHSVMRRLGEKCSLGDCRRMIGNVDADGDGSVNFEEFKKMMTRS 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01853 138 CDD EFh 4 61 IPR002048 GO:0005509
Vimu6g01853 138 ProSitePatterns EF-hand calcium-binding domain. 83 95 IPR018247 -
Vimu6g01853 138 SMART efh_1 4 32 IPR002048 GO:0005509
Vimu6g01853 138 SMART efh_1 40 68 IPR002048 GO:0005509
Vimu6g01853 138 SMART efh_1 110 138 IPR002048 GO:0005509
Vimu6g01853 138 SMART efh_1 74 102 IPR002048 GO:0005509
Vimu6g01853 138 ProSiteProfiles EF-hand calcium-binding domain profile. 36 64 IPR002048 GO:0005509
Vimu6g01853 138 ProSiteProfiles EF-hand calcium-binding domain profile. 106 138 IPR002048 GO:0005509
Vimu6g01853 138 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
Vimu6g01853 138 Gene3D - 1 67 - -
Vimu6g01853 138 Gene3D - 71 138 - -
Vimu6g01853 138 ProSiteProfiles EF-hand calcium-binding domain profile. 1 35 IPR002048 GO:0005509
Vimu6g01853 138 SUPERFAMILY EF-hand 3 137 IPR011992 -
Vimu6g01853 138 FunFam Calmodulin A 1 66 - -
Vimu6g01853 138 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 74 136 - -
Vimu6g01853 138 Pfam EF-hand domain pair 4 62 IPR002048 GO:0005509
Vimu6g01853 138 Pfam EF-hand domain pair 74 136 IPR002048 GO:0005509
Vimu6g01853 138 CDD EFh 74 136 IPR002048 GO:0005509
Vimu6g01853 138 FunFam Probable calcium-binding protein CML27 67 138 - -
Vimu6g01853 138 ProSitePatterns EF-hand calcium-binding domain. 119 131 IPR018247 -
Vimu6g01853 138 ProSiteProfiles EF-hand calcium-binding domain profile. 70 105 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01853 Vimu-Chr6 16725887 16726303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01853 3 136 EF-hand Containing Proteins AT1G18210 56.716 3.43e-51 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01853 K13448 - gmx:100791597 255.758