Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01849 ATGGAAGAAAGCCCTCGAGCTAGCAGAAAGCGAAGCCATCCTTTTTCTTCTTCTTCTCCTTCTCCTCCACATACCAAGCGCCCCAATTTCCCTTCCTTCCAAGACATCCCCAACCTTCCTTCCAACATCAAATCCCTATGTCACCTCATTGCCACTACCTCCGCCGCCGCCATCGAGCACGCCCTCGAAGGCGCCGCAGTCGTCATCACCCCTCACGACGTTGAGGAAGTCCTCAGACTCTCCTACGGCTTCCCAGGCCAGGCCGTCAAATTCTTCCGGTGGAGCGCCCGCCAACTCCACGACAACCACACTCCTTATTCCTGGAACCTCGTGGTCGACCTCTTGGGCAAGAATCGCTTCTTCGACGCGATGTGGGACGCTATTAAGTCAATGCAGAAAGAAGGGCTACTCTCGCTGGCCACGTTTGCCTCTGTCTTCGAGAGCTATGTCATCGCCAACAGAACCCGGGAAGCGATTATGGCTTTTGAGGCTATGGAGAATTACGGTTGTGTGAGGGACGTGATTGCTTTGAACTCATTGTTGAGTGCAATTTGTAGGGATGGTAGGACAGTTGATGCTTGTGATTACTTGCAGATTGCAAAGAAATTTGTCCGGCCGGATGCCGATTCTTACGCGATATTGATGGAAGGATGGGAGGGTGAAGGAGATAAGGGTGTGTTTGGTGCGAAGGAGACTTTTGCTGAGATGGTGATTGAGATTGGATGGGATCCTGCCAATGTGCCTGCTTATGATTCATTCCTGTGTGCCCTTGTTAGAGGGCCTGATGGATTGCTAGAGGCTATTAAGTTTGTAGATTCAATGAGGGATAGGAGGTGTTACCCTGGTGTGAGGTTCTTGAAGGTTGCATTGGATGAGTGTATCAAGTTTCATGATGCTAGGACTGCAAAGTTTTTCTGGGAGGTGTTGGTCGAGGTGGGGAGGGTGTTGCAACCCACCACGGAGATGTACAATTTGATGATTGCTTTGTTTTGTTATTGTGGTGATACTGATGATGCGAGGAGGATGCTTGATGAAATGGTTTTCCGAGGGGCCTTTCCTGATGTGGCGACCTATAATTTGCTGTTAAAGTTCTTGATCAAGGGGAGGAAGTTGAGGGAGGCGTATGCAGTGTTTGTTGAAATGGTGAAGAACGAGTTTGTGCCGGATCAGGATAACTGTGATGCGGCGGTTAAGGTATATGTGAATGGTGGGGAGCCTCTTTTGGCGATGAAGGTTTGGAAGTGTTTGGTTGAGAATTATCAGAGTGATTTGGACCGGACAGCGAATTCTCTGGTTGTGGGGCTTCGTGATTTGAATAGGGTTCCGGAGGCGGTTAAGTATGCTGAGGATATGATTGGAAGAGGAATCAGGTTGTCCTCTTCCACACTGTCAAAACTGAGACAAACCCTTGTCAAGGAAAGAAAGGAATTTGTGTATGAAGAACTTTTGAGAAAGTGCAATTCTCAATAA 1470 0.4864 MEESPRASRKRSHPFSSSSPSPPHTKRPNFPSFQDIPNLPSNIKSLCHLIATTSAAAIEHALEGAAVVITPHDVEEVLRLSYGFPGQAVKFFRWSARQLHDNHTPYSWNLVVDLLGKNRFFDAMWDAIKSMQKEGLLSLATFASVFESYVIANRTREAIMAFEAMENYGCVRDVIALNSLLSAICRDGRTVDACDYLQIAKKFVRPDADSYAILMEGWEGEGDKGVFGAKETFAEMVIEIGWDPANVPAYDSFLCALVRGPDGLLEAIKFVDSMRDRRCYPGVRFLKVALDECIKFHDARTAKFFWEVLVEVGRVLQPTTEMYNLMIALFCYCGDTDDARRMLDEMVFRGAFPDVATYNLLLKFLIKGRKLREAYAVFVEMVKNEFVPDQDNCDAAVKVYVNGGEPLLAMKVWKCLVENYQSDLDRTANSLVVGLRDLNRVPEAVKYAEDMIGRGIRLSSSTLSKLRQTLVKERKEFVYEELLRKCNSQ 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01849 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Vimu6g01849 489 Pfam PPR repeat family 318 365 IPR002885 -
Vimu6g01849 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Vimu6g01849 489 NCBIfam pentatricopeptide repeat 322 355 IPR002885 -
Vimu6g01849 489 NCBIfam pentatricopeptide repeat 141 174 IPR002885 -
Vimu6g01849 489 NCBIfam pentatricopeptide repeat 357 389 IPR002885 -
Vimu6g01849 489 NCBIfam pentatricopeptide repeat 106 136 IPR002885 -
Vimu6g01849 489 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 9 475 - -
Vimu6g01849 489 MobiDBLite consensus disorder prediction 1 34 - -
Vimu6g01849 489 Gene3D Tetratricopeptide repeat domain 266 431 IPR011990 GO:0005515
Vimu6g01849 489 Gene3D Tetratricopeptide repeat domain 81 236 IPR011990 GO:0005515
Vimu6g01849 489 Pfam PPR repeat 141 170 IPR002885 -
Vimu6g01849 489 Pfam PPR repeat 106 136 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01849 Vimu-Chr6 16704578 16707942 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01849 108 485 Miscellaneous Gene Families AT4G11690 21.108 1.51e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01849 - - vun:114191149 864.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01849 6 16704578 16707942 Vimu6g01849 6 16704578 16707942 ECH