Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01845 ATGGGAGATCAAGAAGAGAGGTTAGGGTCGGAGGGTTTGGATTCCGGCGCCGTCGTCAAGACCGATGACTTGTGCATGGAAATTGATCCGCCATTTCAGGAAAACATCGCTACCGCCGAGGACTGGCGGAAAGCGCTTAACAGAGTTGTGCCCGCAGTCGTCGTCCTTCGCACCACCGCCACTCGCTCCTTCGACACCGAGTCCGCCGCCGCCAGCTACGCCACCGGCTTCATCGTGGACAAGAGCCGCGGCATCATTCTCACTAATCGCCACGTGGTCAAGCCAGGTCCTGTGGTTGCCGAAGCCATGTTTCTGAATCGCGAAGAGGTTCCAGTGCATCCGATTTACAGAGATCCGGTACATGATTTTGGGTTCTTTCGTTATGATCCCGGTGCTATACAATTTTTAAACTATGAAGAGATACCTCTTGCTCCTGAAGCTGCTTGTGTTGGACTAGAAATCAGAGTCGTTGGTAATGATAGTGGCGAGAAGGTTTCCATTTTGGCTGGTACTCTTGCTCGTTTGGATAGGGATGCTCCTCATTATAAGAAGGATGGGTATAATGACTTCAACACATTCTATATGCAAGCAGCTTCTGGGACCAAAGGAGGGTCAAGTGGTTCCCCAGTTATAGATTGGCAAGGCAGGGCAGTTGCTCTGAATGCTGGGAGCAAGTCATCAAGTGCATCAGCTTTCTTTCTACCTCTAGAACGAGTTGTGAGGGCCTTAAGGTTTATTCAAAAGGGAAGTGAAACTTATGTTGATAAATGGGAGGCAGTTTCTATACCTCGTGGTACGCTTCAGGTCACATTTCTCCATAAAGGGTTTGACGAGACTCGCCGCCTTGGCCTCAAAACTGAGACGGAGCAGATAGTACGCCAGGCTTCTCCAGCTGGTGAAACTGGAATGCTTGTTGTGGAATCTGTGGTGCCAGGTGGTCCAGGTTATAAACATTTGGAACCAGGTGATGTACTTGTGCGTGTCAATGGAGAAGTCATTACTCAGTTCCTGAAACTGGAGACTCTACTTGATGACAGTGTAAGCAAGAATATTGAATTACAAATTGAAAGAGGTGGCACTTCAAAGAGTTTAACATTGTTGGTGCAAGATTTGCACTCAATAACTCCTGATTATTTCTTAGAAGTGAGTGGGGCAGTAATACATCCTCTTTCTTATCAGCAGGCTAGAAACTTCCGTTTCCATTGCGGTCTTGTTTATGTGGCTGAACCAGGATATATGCTCTTCAGAGCAGGTGTTCCTCGCCATGCAATAATTAAGAAATTTGCTGGGGAAGAAATATCTTGTCTCGAGGAACTAATAACAGTTATTTCTAAACTATCTAGGGGCGCTCGAGTACCATTGGAATATATAAGTTACATGGATCGTCATCGAAGGAAGTCTGTCTTGGTCACAGTTGATAGGCATGAATGGTATGCACCTCCCCAGATATACACTCGTGATAACAGTACTGGCCTTTGGATTGCTAAGCCAGCTCTTAAGCGTGATTCCCCCTTTCTATCGTCTGGTGCAAAAGATGTTGATAATATGTCAAGACAGCCAATTTCACTAACTGGCGAGCATACTTGTGAGGGTCATGTGTGTGAAGGTAACAATCAGGACTTTGTTGATGGTGTCACTAACATGGAAACTAATTGTGAAGATCCTTCAGAGTGTGCATCTCATCAGAATGCATCTGATGGTGTGTTGAAAAAACGAAGAGTGGAGGAAGATTTATCAGCTGATGGAAGTGTTGTTGTTGATTTATCCCAAAACGGTACCAGGGAAACTAAGTTAGAAAAATCTAGTGTCACACAGGATGACATCTTAATGGATTTTCAAGGTGCGACTGCAGCTGCAGCAAATGCATCAGTTGCTGAACGTGTGATTGAGCCTACTCTTGTGATGTTTGAGCTAAGTGACTCGGGTACAGGCCAGTATGTTCATGTTCCACCATCTTGTATGCTTGATGGTGTTCATTCACAGCACTTTTTTGGAACTGGTGTCATAATATATCACTCCAAAGATATGGGATTAGTTGTAGTTGACAAGAATACAGTTGCAATATCTGCCTCTGATGTAATGCTATCCTTCGCTGCCTTCCCAGTTGAAATTCCAGGAGAGGTTGTATTTCTCCATCCTGTTCATAATTATGCTCTCATATCATATGATCCCTCTGCATTGGGACCTGTTGGTGGTTCTGTCGTTCGTGCTGCAGAGTTACTTCCAGAGCCAGCATTACGTCGGGGAGATTCTGTTTACCTTGTGGGGTTGAGTAGAAGCCTTCAAGCAACTTCTAGGAAATCAGTTGTTACCAATCCTTGTGCTGCATTAAATATAGGATCTGCTGATTCTCCTCGCTACAGAGCAACCAATATGGAAGTAATTGAGCTTGATACAGATTTTGGAAGTACATTCTCGGGTGTGCTAGCTGACGAACAAGGAAGGGTCCAAGCTATATGGGGAAGCTTCTCCACTCAGCTTAAATTTGGCTGCAGTACCTCAGAAGATCATCAATTTGTGAGGGGTATTCCAATTTATGCAATAAGCCAGGTCCTTCATAAGATTGTATCCGGCGCAAATGGCCCACCTCTTCTCATAAATGGTGTCAAAAGGCCCATGCCACTTTTGAGAATTTTAGAGGTTGAACTTTATCCAACATTACTTTCAAAGGCCCGGAGTTTTGGATTAAGTGATGATTGGATTCAGGCACTTGTTAAGAAAGATCCAGTGAGACGTCAGGTTTTACGTGTTAAAGGTTGTTTGGCTGGATCAAAGGCTGAAAATCTTTTAGAACAAGGGGACATGGTCTTAGCAATCAATAAAGAACCAGTCACATGCTTCCGTGATATTGAAAATGCTTGTCAAGATTTAGACAAATCAAATGCGAATGATGGGAAGCTTCACTTGACTATTTTCCGGCAGGGACAAGAGGTTGAACTTCTTGTGGGAACAAATGTTAGGGATGGAAATGGCACTGCCCGTGCAATTAATTGGTGTGGCTGTATTGTGCAAGATCCACATCCAGCAGTTCGTGCACTTGGATTTCTTCCGGAAGAAGGTCATGGTGTATATGTGGCAAGATGGTGTCATGGGAGTCCTGTACATAGATATGGTCTGTATGCTCTTCAATGGATAGTCGAAATTAATGGAAAACCAACTCCAAATCTAGATGCTTTTGTTGATGTGACAAAGTGGTTTGATTACTCTATAAAATGCATGGCACGTGCACATGCGGAAAATATATGCATATTGGATGAAGAATGTTGTAATTCTCTTGTCAGTCAGTATCTAATGGAACTAGAACATGGAGAGTTTGTTCGGGTAAGGACAATTCACCTCAATGGGAAGCCACGAGTCCTAACATTGAAGCAAGATTTGCACTATTGGCCTACGTGGGAATTGAGATTTGATCCAAATTCTGCGATGTGGCATCGCAACATAATCAAGGGATTGAACTGCAGTACTGTATGA 3471 0.4411 MGDQEERLGSEGLDSGAVVKTDDLCMEIDPPFQENIATAEDWRKALNRVVPAVVVLRTTATRSFDTESAAASYATGFIVDKSRGIILTNRHVVKPGPVVAEAMFLNREEVPVHPIYRDPVHDFGFFRYDPGAIQFLNYEEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSSSASAFFLPLERVVRALRFIQKGSETYVDKWEAVSIPRGTLQVTFLHKGFDETRRLGLKTETEQIVRQASPAGETGMLVVESVVPGGPGYKHLEPGDVLVRVNGEVITQFLKLETLLDDSVSKNIELQIERGGTSKSLTLLVQDLHSITPDYFLEVSGAVIHPLSYQQARNFRFHCGLVYVAEPGYMLFRAGVPRHAIIKKFAGEEISCLEELITVISKLSRGARVPLEYISYMDRHRRKSVLVTVDRHEWYAPPQIYTRDNSTGLWIAKPALKRDSPFLSSGAKDVDNMSRQPISLTGEHTCEGHVCEGNNQDFVDGVTNMETNCEDPSECASHQNASDGVLKKRRVEEDLSADGSVVVDLSQNGTRETKLEKSSVTQDDILMDFQGATAAAANASVAERVIEPTLVMFELSDSGTGQYVHVPPSCMLDGVHSQHFFGTGVIIYHSKDMGLVVVDKNTVAISASDVMLSFAAFPVEIPGEVVFLHPVHNYALISYDPSALGPVGGSVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSVVTNPCAALNIGSADSPRYRATNMEVIELDTDFGSTFSGVLADEQGRVQAIWGSFSTQLKFGCSTSEDHQFVRGIPIYAISQVLHKIVSGANGPPLLINGVKRPMPLLRILEVELYPTLLSKARSFGLSDDWIQALVKKDPVRRQVLRVKGCLAGSKAENLLEQGDMVLAINKEPVTCFRDIENACQDLDKSNANDGKLHLTIFRQGQEVELLVGTNVRDGNGTARAINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKPTPNLDAFVDVTKWFDYSIKCMARAHAENICILDEECCNSLVSQYLMELEHGEFVRVRTIHLNGKPRVLTLKQDLHYWPTWELRFDPNSAMWHRNIIKGLNCSTV 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01845 1156 SUPERFAMILY PDZ domain-like 1020 1064 IPR036034 GO:0005515
Vimu6g01845 1156 SUPERFAMILY Trypsin-like serine proteases 40 244 IPR009003 -
Vimu6g01845 1156 Pfam PDZ domain 305 357 IPR041489 -
Vimu6g01845 1156 Gene3D - 29 139 IPR043504 -
Vimu6g01845 1156 SUPERFAMILY PDZ domain-like 916 1018 IPR036034 GO:0005515
Vimu6g01845 1156 PRINTS HtrA/DegQ protease family signature 84 96 IPR001940 GO:0004252|GO:0006508
Vimu6g01845 1156 PRINTS HtrA/DegQ protease family signature 318 330 IPR001940 GO:0004252|GO:0006508
Vimu6g01845 1156 PRINTS HtrA/DegQ protease family signature 191 208 IPR001940 GO:0004252|GO:0006508
Vimu6g01845 1156 PRINTS HtrA/DegQ protease family signature 150 174 IPR001940 GO:0004252|GO:0006508
Vimu6g01845 1156 PRINTS HtrA/DegQ protease family signature 213 230 IPR001940 GO:0004252|GO:0006508
Vimu6g01845 1156 Pfam Trypsin-like peptidase domain 74 220 - -
Vimu6g01845 1156 CDD PDZ_serine_protease 280 366 - -
Vimu6g01845 1156 SMART pdz_new 890 975 IPR001478 GO:0005515
Vimu6g01845 1156 SMART pdz_new 280 359 IPR001478 GO:0005515
Vimu6g01845 1156 Pfam PDZ-like domain 993 1064 IPR025926 -
Vimu6g01845 1156 Pfam PDZ-like domain 373 446 IPR025926 -
Vimu6g01845 1156 PANTHER PRO-APOPTOTIC SERINE PROTEASE NMA111 1096 1153 - -
Vimu6g01845 1156 SUPERFAMILY Trypsin-like serine proteases 654 829 IPR009003 -
Vimu6g01845 1156 Pfam Peptidase family M50 296 370 IPR008915 GO:0006508
Vimu6g01845 1156 Gene3D - 277 374 IPR036034 GO:0005515
Vimu6g01845 1156 ProSiteProfiles PDZ domain profile. 269 333 IPR001478 GO:0005515
Vimu6g01845 1156 Gene3D - 914 988 IPR036034 GO:0005515
Vimu6g01845 1156 Gene3D - 652 858 - -
Vimu6g01845 1156 Gene3D - 146 255 IPR043504 -
Vimu6g01845 1156 SUPERFAMILY PDZ domain-like 304 403 IPR036034 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01845 K22686 - gmx:100777219 2077.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01845 6 16652635 16669650 Vimu6g01845 6 16652635 16669650 ECH