Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01832 ATGGAGTCTCCTCAAACCAAGAAATCGGGTCTGAACCTCCCAGCTGGGATGTCCGGAACCTCACTCCGCCTTGACACTTTTGCTTCATCGCCATCTTCTTCTCGTTCCATCGCCAGCCTCACTTCTCCTTCTTCTCTCCGTTCCATCTCTAACCTCACTTCACCTTCGAAATCAAGCACATGCAGCGACAGGTTCATCCCCTGCCGCTCCTCCTCACGCCTCCACACGTTCGGCCTCGTAGACAGGCCATCGCCGGTGAAGGAAGGGAGTAACGAGGCGTATTCCAGGTTGTTGAAACGCGAACTCTTTGGATCTGACTTTGCTTCTCCTTCTTCTCTTTCTTCTCCTTCTGCAGGTGCTCCTCCCTCGCCGATCAGCCCCAGTAAAAACATGCTCCGTTTCAAGACCGATCACTCCACTACGCCTTCCTCCCCTTACTCTCCTTCCATCTTGGGGCAGCAGAGTACCTTCGCTTCTGATTCCTCTACCCCGCCTCCCAAACCTCCCAGGAAAGATGTTGCCGTTAGCTCCATCCACCCTTATAGAGTATACGATGTCCCGTTTGTTACATGTGTGCCAATCTCTACCAATATGTTACATATAAAGTTGATCGTGAGCCTTAAACCAACAATTCAAGCTTTGGGTCCTCATTCTTCTTCAGTTCTGGATGCTCCATCACTTCAGGATGACTTTTACTTGAATCTAGTGGACTGGTCCTCACAGAATGTTCTTGCTGTGGGACTAGGCACTTGTGTTTATCTTTGGAGCGCTTCAAACAGTAAAGTGACTAAGCTATGTGACTTGGGTCCTTATGATGGTGTATGTTCTGTCCAGTGGACCCGGGAGGGCTCTTTTATATCAATTGGTACAAATCTTGGCCAAGTTCAGGTTTGGGATGGAACTCAGTGTAAGAAGGTCAGAACTATGGGAGGACATCAGACAAGGACTGGTGTGTTGGCATGGAACTCTCGCATTCTGGCCTCGGGGAGCAGGGATAGGAACATACTTCAGCATGACATGAGGGTTTCAGGTGACTTTATTAACAAGCTCGTTGGCCACAAGTCAGAGGTATGTGGATTGAAATGGTCCTGTGATGACAGGGAACTTGCCTCTGGTGGTAATGATAATCAGCTCCTGGTATGGAATCAACACTCTCAGCAACCAGCTCTGAGACTCACAGAACATACTGCTGCAGTTAAGGCCATTGCTTGGTCACCTCACCAAAGCGGTCTCCTTGTGTCTGGCGGTGGAACTGCTGATAGGTGCATTCGTTTTTGGAACACTACAAATGGTCATCAATTAAACAGTGTTGACACTGGGAGCCAGGTCTGCAACCTTGTTTGGAGTAAAAATGTGAATGAGCTAGTAAGTACACACGGATACTCCCAAAATCAGATTATGGTGTGGAAGTATCCATCATTGGCAAAGGTTGCAACTCTAACTGGCCATAGCATGAGAGTGCTGTACCTTGCAATGTCACCTGATGGTCAGACAATAGTAACTGGAGCAGGGGATGAGACTCTCCGGTTCTGGAATATTTTCCCATCAATGAAAGCACCTGCTCCTGTTAAAGATACAGGCCTTTGGTCACTGGGGCGTACTCAAATTCGATGA 1614 0.4839 MESPQTKKSGLNLPAGMSGTSLRLDTFASSPSSSRSIASLTSPSSLRSISNLTSPSKSSTCSDRFIPCRSSSRLHTFGLVDRPSPVKEGSNEAYSRLLKRELFGSDFASPSSLSSPSAGAPPSPISPSKNMLRFKTDHSTTPSSPYSPSILGQQSTFASDSSTPPPKPPRKDVAVSSIHPYRVYDVPFVTCVPISTNMLHIKLIVSLKPTIQALGPHSSSVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWSASNSKVTKLCDLGPYDGVCSVQWTREGSFISIGTNLGQVQVWDGTQCKKVRTMGGHQTRTGVLAWNSRILASGSRDRNILQHDMRVSGDFINKLVGHKSEVCGLKWSCDDRELASGGNDNQLLVWNQHSQQPALRLTEHTAAVKAIAWSPHQSGLLVSGGGTADRCIRFWNTTNGHQLNSVDTGSQVCNLVWSKNVNELVSTHGYSQNQIMVWKYPSLAKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNIFPSMKAPAPVKDTGLWSLGRTQIR 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01832 537 SUPERFAMILY WD40 repeat-like 227 513 IPR036322 GO:0005515
Vimu6g01832 537 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 480 513 - -
Vimu6g01832 537 ProSiteProfiles Trp-Asp (WD) repeats profile. 480 513 IPR001680 GO:0005515
Vimu6g01832 537 MobiDBLite consensus disorder prediction 1 64 - -
Vimu6g01832 537 Pfam Eukaryotic translation initiation factor eIF2A 375 505 IPR013979 -
Vimu6g01832 537 FunFam FIZZY-related 2 isoform 1 216 515 - -
Vimu6g01832 537 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 350 382 - -
Vimu6g01832 537 MobiDBLite consensus disorder prediction 110 173 - -
Vimu6g01832 537 ProSitePatterns Trp-Asp (WD) repeats signature. 499 513 IPR019775 -
Vimu6g01832 537 ProSiteProfiles Trp-Asp (WD) repeats profile. 350 391 IPR001680 GO:0005515
Vimu6g01832 537 Gene3D - 212 516 IPR015943 GO:0005515
Vimu6g01832 537 MobiDBLite consensus disorder prediction 1 16 - -
Vimu6g01832 537 ProSitePatterns Trp-Asp (WD) repeats signature. 414 428 IPR019775 -
Vimu6g01832 537 MobiDBLite consensus disorder prediction 22 64 - -
Vimu6g01832 537 SMART WD40_4 473 512 IPR001680 GO:0005515
Vimu6g01832 537 SMART WD40_4 385 427 IPR001680 GO:0005515
Vimu6g01832 537 SMART WD40_4 302 339 IPR001680 GO:0005515
Vimu6g01832 537 SMART WD40_4 259 299 IPR001680 GO:0005515
Vimu6g01832 537 SMART WD40_4 343 382 IPR001680 GO:0005515
Vimu6g01832 537 ProSiteProfiles Trp-Asp (WD) repeats profile. 392 436 IPR001680 GO:0005515
Vimu6g01832 537 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 47 519 IPR033010 GO:0010997|GO:0097027|GO:1904668
Vimu6g01832 537 MobiDBLite consensus disorder prediction 129 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01832 Vimu-Chr6 16566666 16569850 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01832 347 513 Miscellaneous Gene Families AT5G08390 22.024 4.30e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01832 K03364 - gmx:547741 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01832 6 16566666 16569850 Vimu6g01832 6 16566666 16569850 ECH