Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01822 ATGCCTTCTTCCTCACATTACATCCTTTTCTTCTGCATTCTAGTCTCCATCTCCGACACAGATGGAACAGAACTCATAGTGGCGAACAACTGCAAAGAAAGTGTATGGCCCGCAATTCTCGGCAACGGAGGACACCCTTCACCAAAACATGGCGGGTTTTATCTTGGAAGCGGCGAAGAGGTTATTGTGCATGTCCCTGATGGTTGGTCAGGGAGAATCTGGGGCAGACAAGGGTGTTACTTGGACGAACAAACAGGCAAAGGTTATTGTCAAACAGGAGATTGTGGAGGGCTATTGCAATGCAATGGTATCGGTGGAGTACCTCCTGCAACCCTAGTAGAAATGACCCTTGGAACCTCAAAATCAGCTTTGCATTTCTATGATGTTAGTTTGGTTGATGGGTTTAACCTTCCAGTGTCAATGAAGCCAGTGAGTGGTAGTGGTGGAGGTTGTGGTGTTGCTGGCTGTGAAGCTAACTTGAACGTTTATTGCCCTTCAGCTTTGGTTGTGGAGAGGAATGGGAAGGTTGTGGGATGCAAGAGTGCTTGTTTGGCAGCAAAGTCAGATAGGTATTGCTGCACTGGTGAGTTTGCTGGAAGATGCAAGCCAACTGTCTTTTCTCGTCTCTTCAAGACCGTTTGCCCTAATGCTTATAGCTATGCTTTTGATGATTCAGTCCTCAAGACTTGTGTGGCACCTCGCTATGTCATTACATTTTGCCCTCCACATTGA 732 0.4672 MPSSSHYILFFCILVSISDTDGTELIVANNCKESVWPAILGNGGHPSPKHGGFYLGSGEEVIVHVPDGWSGRIWGRQGCYLDEQTGKGYCQTGDCGGLLQCNGIGGVPPATLVEMTLGTSKSALHFYDVSLVDGFNLPVSMKPVSGSGGGCGVAGCEANLNVYCPSALVVERNGKVVGCKSACLAAKSDRYCCTGEFAGRCKPTVFSRLFKTVCPNAYSYAFDDSVLKTCVAPRYVITFCPPH 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01822 243 PRINTS Pathogenesis-related protein signature 231 240 IPR001938 -
Vimu6g01822 243 PRINTS Pathogenesis-related protein signature 72 83 IPR001938 -
Vimu6g01822 243 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Vimu6g01822 243 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Vimu6g01822 243 PANTHER OS03G0233200 PROTEIN 10 241 IPR001938 -
Vimu6g01822 243 ProSitePatterns Thaumatin family signature. 86 101 IPR017949 -
Vimu6g01822 243 ProSiteProfiles Thaumatin family profile. 25 243 IPR001938 -
Vimu6g01822 243 SUPERFAMILY Osmotin, thaumatin-like protein 24 242 IPR037176 -
Vimu6g01822 243 FunFam Thaumatin-like protein 1a 23 241 - -
Vimu6g01822 243 CDD TLP-PA 24 240 - -
Vimu6g01822 243 Gene3D Thaumatin 24 241 IPR037176 -
Vimu6g01822 243 Pfam Thaumatin family 29 241 IPR001938 -
Vimu6g01822 243 PIRSF PR5 2 243 IPR001938 -
Vimu6g01822 243 SMART tha2 25 241 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01822 Vimu-Chr6 16439513 16440416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01822 13 241 Receptor kinase-like Gene Family AT5G38280 40.664 1.08e-47 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01822 - - gsj:114381056 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01822 6 16439513 16440416 Vimu6g01822 6 16439513 16440416 ECH