Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01813 ATGGCTAACCCAGAGGGTAGTAGCAGAGCTTCAAGATGGTCACTTAAGGGAACCACTGCTCTCGTTACTGGAGGCACACGCGGAATCGGGCATGCTGTAGTGGAGGAACTGGCAGAGTTTGGTGCCAATGTGTACACTTGTTCCAGGAAGGAAGAGGAGCTGAATGCATGTTTAAAGGAATGGAAAGAGAAGGGATTTTCGGTTTCTGGTTCGGTTTGTGATGCGTCATCTCCAGCCCAAAGAGAGAATCTCATTAAACAAGTGGCCTCTGCCTTCAACGGCACGCTCAACATACTTGTGAATAATGTTGGAACAAACGTGAGGAAGCCAACGATAGAGTATACAACCGAAGAATATTCAAAATTAATGGCAACTAACTTGGACTCTGCATACCATCTGAGCCAACTTGCACATCCTCTTCTTAAAGCATCTGGAAATGGAAGTATTGTGTTCATTTCCTCCGTTGCAGGTCAGAGAAGTGTAGGTTCTGGAGCCATTTATGCATCAACTAAAGCTGCAATGGATCAGCTTACCAAGTATCTTGCATGTGAATGGGCCAAGGACAATATAAGGAGCAATAGTGTTGCACCCTGGTATACCAAAACACCACTTGCGGAAGCTGTAATGCTCTTTCACCCTGTCTATTTTCTGTTCCATGAGGACTAA 666 0.452 MANPEGSSRASRWSLKGTTALVTGGTRGIGHAVVEELAEFGANVYTCSRKEEELNACLKEWKEKGFSVSGSVCDASSPAQRENLIKQVASAFNGTLNILVNNVGTNVRKPTIEYTTEEYSKLMATNLDSAYHLSQLAHPLLKASGNGSIVFISSVAGQRSVGSGAIYASTKAAMDQLTKYLACEWAKDNIRSNSVAPWYTKTPLAEAVMLFHPVYFLFHED 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01813 221 Gene3D - 3 215 - -
Vimu6g01813 221 PANTHER TROPINONE REDUCTASE 12 208 IPR045000 GO:0016491
Vimu6g01813 221 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 94 105 IPR002347 -
Vimu6g01813 221 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 IPR002347 -
Vimu6g01813 221 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 IPR002347 -
Vimu6g01813 221 Pfam short chain dehydrogenase 19 207 IPR002347 -
Vimu6g01813 221 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 12 210 IPR036291 -
Vimu6g01813 221 FunFam Short-chain dehydrogenase reductase 4 216 - -
Vimu6g01813 221 PRINTS Glucose/ribitol dehydrogenase family signature 94 105 IPR002347 -
Vimu6g01813 221 PRINTS Glucose/ribitol dehydrogenase family signature 188 205 IPR002347 -
Vimu6g01813 221 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Vimu6g01813 221 PRINTS Glucose/ribitol dehydrogenase family signature 141 157 IPR002347 -
Vimu6g01813 221 PRINTS Glucose/ribitol dehydrogenase family signature 167 186 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01813 Vimu-Chr6 16391310 16393666 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01813 12 204 Miscellaneous Gene Families AT2G29290 64.767 4.67e-91 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01813 K08081 - gmx:100819646 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01813 6 16391310 16393666 Vimu6g01813 6 16391310 16393666 ECH