Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01808 ATGGGACGTCTGAAGCTGCAAGCTGGTATCAATGCAATAGAGGAGGAGGAACCTGAGGAATGTGATGCTGCCTACCCTAACAAAACAACTTTGGCATGCATGATCAATTCAGAAATTGGTGCTGTTTTGGCCGTGATGAGGAGAAATGTCAGATGGGGAGGCCGTTACATGTCAGGTGATGATCAGCTGGAACACTCTCTCATTCAGTCTTTTAAGACAGTGAGAAGACAAATCTTTTCATGGCATCACCATCAGTGGCAAGCTATCAACCCAGCCTTGTATCTACAGCCATTTTTAGATGTAATTAGGTCTGATGAAACTGGTGCCCCAATTACTGGTGTTGCTTTGTCATCTGTTTACAAGATCTTGACTCTTGATGTGATTGATCAAAATACTGTCAATGTTGAGGATGCCATGCATTTGGTGGTCGATGCTGTCACTAGCTGCAGATTTGAGGTCACTGATCCTTCTTCAGAAGAAGTTGTTTTAATGAAGATACTACAAGTTCTCCTAGCTTGTATGAAAAGTAAAGCATCTATAATGCTGAGTAATCAACATGTTTGCACCATAGTGAACACTTGTTTTCGGATTGTTCATCAAGCAGGAAGTAAAGGCGAGTTGTTGCAGCAGATAGCACGATATACAATGCATGAACTTGTAAGGTGTATTTTCTCTCACCTTCAAGATGTTGGCAATACTGATCATGCGCTGGTTAATGGGAGCACTAACTTGAAACAGGAGACTGGAGGCCTAGACAATGACTATGCATTTGGAAGTAGACAATTGGAGAATGGAAGTATTAGTTCTGAATATGATAATCAATCATCATCTACAAACTCTGCTCCCAATGTTTCAAGTGTTGTGAAAGCAACTGTGATGGATGAAAACACAGCAATAACTATTAGTTGCAAGGATGGTGTACCATATGACATGCATCTGATGACTGAACCGTATGGTGTTCCTTGCATGGTGGAAATATTTCACTTTTTGTGTTCTTTGCTGAATGTTGTTGAGCATTCGGGTATGGGTCCTAGATCAAACACACTAGCATTCGATGAAGATGTGCCTCTCTTTGCCTTAACTCTTATTAATTCAGCAATAGAACTTGGAGGACCTTCTATTTGTCGTCACCCAAGGTTGCTGAGCTTAATTCAGGATGAATTGTTCCATAATCTGATGCAATTTGGTTTGTCAATGAGCCCCCTTATACTTTCAATGGTTTGTAGCATTGTTCTCAATCTGTATCATCATCTTCGTACAGAGCTCAAATTACAGCTTGAAGCTTTTTTTTCTTGTGTCATTTTAAGACTTGCACAAAGCAGATATGGAGCTTCTTACCAGCAGCAAGAGGTAGCCATGGAGGCCCTTGTTGACTTTTGCAGGCAAAAGACATTTATGGTAGATATGTATGCTAACTTTGACTGTGACATAACTTGCAGTAATGTCTTTGAAGACCTTGCTAATTTGTTGTCTAAAAGTGCATTTCCTGTGAATTGTCCATTGTCTGCCATGCATATTCTTGCTTTGGATGGTCTTATTGCTGTTATACAGGGAATGGCTGAAAGGATAGCCAATGGATCTGTAAGCTCTGAATATTCTCCAGTGAATCTTGAAGAGTATACTCCATTCTGGATGGTTAAATGTGAGAATTATAACGATCCAAATCATTGGGTTCCTTTTGTCCGCCGAAGAAAGTACATAAAGAGAAGATTGATGATTGGTGCTGACCACTTTAATCGTGATCCTAAGAAAGGTCTGGAGTTTCTCCAAGGAACACATCTTTTGCCTGACAAACTTGATCCTCAAAGTGTTGCCTGCTTTTTCAGATACACTGCTGGGTTGGATAAGAATCTTGTTGGTGATTTCCTTGGAAATCATGATGAATTCTGTGTTCAGGTGCTTCATGAATTTGCTGGAACGTTTGATTTCCAAGACATGAATTTAGACACTGCTCTGCGTCTATTCTTGGAGACATTCAGATTGCCAGGAGAATCACAAAAAATACATAGGGTGCTTGAAGCTTTCTCCGAGAGATATTATGAACAATCACCACATATCCTAGCTAACAAGGATGCTGCTCTTGTTTTGTCGTACTCAATGATAATGCTTAATACAGATCAACACAATGTTCAAGTTAAAAAGAAGATGACAGAAGAGGACTTTATTCGGAATAATAGGCTTATAAATGGTGGCAACGATCTGCCTCGAGAAATGCTGTCAGAGATTTACCATTCAATTTGTAAGAATGAGATTCGCACAACCCCTGAACAAGGTGTTGGTTTTCCTGAAATGACACCAAGTCGATGGATTGACCTAATGCATAAGTCCAAAAAAACTGCTCCATTTATTGTATCTGATTCTAAGGCCTACCTTGATCATGATATGTTTGCCATAATGTCAGGCCCAACAATTGCTGCCATCTCTGTGGTATTTGATCATGCTGAACAGGAGGAGGTATACCAAACATGTATGGATGGATTTTTGGCTATTGCTAAAATTTCTGCTTGCCATCATCTTGAAGATGTTCTGGATGATTTGGTAGTGTCTCTTTGTAAGTTCACTACACTTTTAAACCCGTCATCAGTTGAGGAACCAGTCCTAGCCTTTGGAGATGACATGAAAGCTAGAATGGCAACTGTGACAGTTTTCACTATAGCAAACAGATACGGTGATTACATCCGCACAGGTTGGAGAAATATTCTTGATTGCATCTTAAGACTGCACAAGCTTGGTCTTCTTCCTGCACGTGTTGCCAGTGATGCAGCTGATGAATCAGAGCTTTCTGCTGAAACTGTTCATGGTAAACCTATTATGAATTCTTTATCCTCAGCTCATATGCAATCTATTGGCACTCCAAGGAGATCCTCTGGATTGATGGGTAGGTTTAGTCAACTCTTATCCCTTGATACTGAGGAACCAAGATCACAACCTACTGAACAACAACTTGCTGCTCATCAACGCACCCTACAAACCATACAGAAATGTCATATTGACAGCATATTCACTGAGAGTAAGTTTCTGCAAGCTGAATCTTTATTGCAGCTAGCAAGAGCACTCGTTTGGGCTGCAGGGAGACCACAAAAAGGGAGCAGCACACCTGAGGATGAAGATACAGCAGTTTTCTGCCTGGAGTTGCTGATTGCAATTACTTTGAATAACAGGGATAGAATTGGGATTCTTTGGCATGGTGTGTATGAACACATATCCAACATTGTTCAGTCAACTCTAATGCCCTGTGCCCTGGTAGAGAAGGCTGTTTTTGGACTATTGCGAATTTGCCAGCGGTTGCTTCCCTACAAGGAGAACATTGCTGATGAACTTCTGAGGTCATTGCAACTTGTCTTGAAGCTTGATGCCCGGGTTGCTGATGCATACTGTGAGCAGATTACTCAAGAAGTCAGTCGCCTTGTAAAGGCAAATGCTTCTCACATAAGATCTCAGCTAGGATGGCGTACAATTACATCACTACTTTCCATCACAGCTAGACACATAGAAGCATCTGAAGCTGGGTTTGATGCACTATTGTTCATAATGTCTGATGGTGCCCACTTGCTTCCAGCTAATTATGTTCTCTGTGTAGATACTGCCAGGCAGTTTGCTGAGTCTCGTGTTGGACAAGCAGAGCGTTCTGTGCGGGCGCTAGATCTCATGGCAGGGTCTGTCAATTGCTTGGCACGGTGGATCAGTGAGGCCAAGGAATCAATGGAGGAGGAACAGGTGTCTAAGTTATCTCAGGATATTGGAGAGATGTGGTTGAGACTAGTACAAGGTCTTAGAAAGGTGTGTTTAGACCAGAGAGAGGAGGTTAGAAATCATGCTTTATTATCTCTGCAGAAGTGCTTGACTGGGGCTGATGACATTTATCTACCATATAGCATGTGGTTACAATGTTTTGATCTTGTGATCTTCACTGTACTTGATGACCTGCTTGAGATTGCACAGGGACACTCTCAAAAGGATTATCGCAATATGGAAGGCACCCTTATCTTAGCAATGAAGCTCTTGTTCAAAGTTTTTCTTCAATTACTCCCAGAATTATCACAATTAACAACCTTCTGTAAGCTATGGTTGGGTGTACTGAGCAGAATGGAAAAATATATGAAGGTGAAGGTTAGGGGGAAAAGAAGTGAGAAGCTTCAAGAGGCGGTACCTGAGCTGCTTAAAAACTCCTTGCTTGTTATGAAGATGAGGGGTATACTAGCGCAGAGGAGTGCCTTGGGCGGTGATAGTCTGTGGGAACTAACATGGCTACACGTGAATAACATTTCACCATCACTGCAGCTTGAGGTATTCCCTGAGCAGGATACTGAGCATTTGCCGCACAAACAGGGTGAAACAATAGGGGGTTTGGTCACTGATGATAAGGGTTCTGTTCCTTCAAGTGAAACAGCAAGCCGGGAAGATGCTGGCGTTGTTGGTTAA 4422 0.4172 MGRLKLQAGINAIEEEEPEECDAAYPNKTTLACMINSEIGAVLAVMRRNVRWGGRYMSGDDQLEHSLIQSFKTVRRQIFSWHHHQWQAINPALYLQPFLDVIRSDETGAPITGVALSSVYKILTLDVIDQNTVNVEDAMHLVVDAVTSCRFEVTDPSSEEVVLMKILQVLLACMKSKASIMLSNQHVCTIVNTCFRIVHQAGSKGELLQQIARYTMHELVRCIFSHLQDVGNTDHALVNGSTNLKQETGGLDNDYAFGSRQLENGSISSEYDNQSSSTNSAPNVSSVVKATVMDENTAITISCKDGVPYDMHLMTEPYGVPCMVEIFHFLCSLLNVVEHSGMGPRSNTLAFDEDVPLFALTLINSAIELGGPSICRHPRLLSLIQDELFHNLMQFGLSMSPLILSMVCSIVLNLYHHLRTELKLQLEAFFSCVILRLAQSRYGASYQQQEVAMEALVDFCRQKTFMVDMYANFDCDITCSNVFEDLANLLSKSAFPVNCPLSAMHILALDGLIAVIQGMAERIANGSVSSEYSPVNLEEYTPFWMVKCENYNDPNHWVPFVRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIHRVLEAFSERYYEQSPHILANKDAALVLSYSMIMLNTDQHNVQVKKKMTEEDFIRNNRLINGGNDLPREMLSEIYHSICKNEIRTTPEQGVGFPEMTPSRWIDLMHKSKKTAPFIVSDSKAYLDHDMFAIMSGPTIAAISVVFDHAEQEEVYQTCMDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPSSVEEPVLAFGDDMKARMATVTVFTIANRYGDYIRTGWRNILDCILRLHKLGLLPARVASDAADESELSAETVHGKPIMNSLSSAHMQSIGTPRRSSGLMGRFSQLLSLDTEEPRSQPTEQQLAAHQRTLQTIQKCHIDSIFTESKFLQAESLLQLARALVWAAGRPQKGSSTPEDEDTAVFCLELLIAITLNNRDRIGILWHGVYEHISNIVQSTLMPCALVEKAVFGLLRICQRLLPYKENIADELLRSLQLVLKLDARVADAYCEQITQEVSRLVKANASHIRSQLGWRTITSLLSITARHIEASEAGFDALLFIMSDGAHLLPANYVLCVDTARQFAESRVGQAERSVRALDLMAGSVNCLARWISEAKESMEEEQVSKLSQDIGEMWLRLVQGLRKVCLDQREEVRNHALLSLQKCLTGADDIYLPYSMWLQCFDLVIFTVLDDLLEIAQGHSQKDYRNMEGTLILAMKLLFKVFLQLLPELSQLTTFCKLWLGVLSRMEKYMKVKVRGKRSEKLQEAVPELLKNSLLVMKMRGILAQRSALGGDSLWELTWLHVNNISPSLQLEVFPEQDTEHLPHKQGETIGGLVTDDKGSVPSSETASREDAGVVG 1473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01808 1473 Gene3D - 644 760 IPR023394 -
Vimu6g01808 1473 Gene3D - 561 643 - -
Vimu6g01808 1473 SMART sec7_5 564 751 IPR000904 GO:0005085|GO:0032012
Vimu6g01808 1473 Pfam Sec7 domain 568 751 IPR000904 GO:0005085|GO:0032012
Vimu6g01808 1473 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 77 1436 - -
Vimu6g01808 1473 SUPERFAMILY ARM repeat 353 1320 IPR016024 -
Vimu6g01808 1473 FunFam ARF guanine-nucleotide exchange factor GNOM-like 643 761 - -
Vimu6g01808 1473 SUPERFAMILY Sec7 domain 565 754 IPR035999 GO:0005085|GO:0032012
Vimu6g01808 1473 ProSiteProfiles SEC7 domain profile. 560 749 IPR000904 GO:0005085|GO:0032012
Vimu6g01808 1473 CDD Sec7 568 751 IPR000904 GO:0005085|GO:0032012
Vimu6g01808 1473 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 321 482 IPR032691 -
Vimu6g01808 1473 MobiDBLite consensus disorder prediction 1441 1473 - -
Vimu6g01808 1473 FunFam ARF guanine-nucleotide exchange factor GNOM 561 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01808 Vimu-Chr6 16358695 16364534 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01808 K18443 - gmx:100780239 2805.01