Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01805 ATGACAGAGCCAGAAATCAGCAGAAGTAAAAGAGGAGGAAGATGGTCTCTCAGAGGAATGACCGCTCTTGTCACCGGCGGCACTCGCGGGATCGGACACGCCATAGTGAGTGACTTGGCCGCGTTTGGTGCGGCTGTGCATACTTGTTCAAGGACCCAAACTGAGCTCGACAAGTGCTTAGAAGAGTGGCAGAGTGAGGGGATTAAGGTTACTGGATCGGTGTGTGATGTCTCCTCGCCTCTTCAGAGAAAGAATCTTATTCAGGAAGTAGCATTCATCTTCAATGGCAAGCTTAACATCTATTCTCATGGTAGTTACAAGAATGAAGAAGGAATTGTAAACAACGTTGGAACAAACTTTAGAAAGCCAACAATTGAGTACAGTGCTGAAGAATACTCACAGCTGATGACAGTTAATTTAGACTCCTCATTCAATCTGTGCCAACTTGCATATCCTCTTCTGAAAGAATCTGGAAATGGAAGCATTGTGTTCATTTCATCTGTTGCTGGTGTGGTCAGCTTGGGTACTGGAGCTGTCTATGCAGCAAGTAAAGCTGCAATAAATCAGCTTACGAAAAATCTGGCATGTGAATGGGCAAAAGACAACATAAGGAGCAACTGTGTTGTACCATGGGTTACTAGGACCCCGCTTGTTGAACATTTGTTGAAAAATGAAAAGTTAGTGGATGAAATAATGTACCGTACACCAATGAAGCGTATAGCAGAAGCAGAAGAAGTATCATCTTTGGTGACTTTCCTGTGCTTGCCTGCTGCTTCTTACATCAGTGGACAGGTTATCTGTGTTGATGGAGGATTAACAGTGAATGGATTTCAACCAAGCATGAGAATTACCTGA 855 0.4374 MTEPEISRSKRGGRWSLRGMTALVTGGTRGIGHAIVSDLAAFGAAVHTCSRTQTELDKCLEEWQSEGIKVTGSVCDVSSPLQRKNLIQEVAFIFNGKLNIYSHGSYKNEEGIVNNVGTNFRKPTIEYSAEEYSQLMTVNLDSSFNLCQLAYPLLKESGNGSIVFISSVAGVVSLGTGAVYAASKAAINQLTKNLACEWAKDNIRSNCVVPWVTRTPLVEHLLKNEKLVDEIMYRTPMKRIAEAEEVSSLVTFLCLPAASYISGQVICVDGGLTVNGFQPSMRIT 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01805 284 Gene3D - 4 277 - -
Vimu6g01805 284 FunFam Short-chain dehydrogenase reductase 7 278 - -
Vimu6g01805 284 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 167 195 IPR020904 GO:0016491
Vimu6g01805 284 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Vimu6g01805 284 PRINTS Glucose/ribitol dehydrogenase family signature 180 199 IPR002347 -
Vimu6g01805 284 PRINTS Glucose/ribitol dehydrogenase family signature 201 218 IPR002347 -
Vimu6g01805 284 PRINTS Glucose/ribitol dehydrogenase family signature 21 38 IPR002347 -
Vimu6g01805 284 PRINTS Glucose/ribitol dehydrogenase family signature 154 170 IPR002347 -
Vimu6g01805 284 PRINTS Glucose/ribitol dehydrogenase family signature 236 256 IPR002347 -
Vimu6g01805 284 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 180 199 IPR002347 -
Vimu6g01805 284 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Vimu6g01805 284 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 168 IPR002347 -
Vimu6g01805 284 PANTHER TROPINONE REDUCTASE 14 276 IPR045000 GO:0016491
Vimu6g01805 284 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 19 275 IPR036291 -
Vimu6g01805 284 Pfam Enoyl-(Acyl carrier protein) reductase 28 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01805 Vimu-Chr6 16326719 16328084 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01805 14 279 Miscellaneous Gene Families AT2G29290 59.701 1.87e-115 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01805 K08081 - gmx:100800947 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01805 6 16326719 16328084 Vimu6g01805 6 16326719 16328084 ECH