Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01804 ATGTATATGCACGCCATTGTGAGTGACTTGGCCGCGTTTGGCGCCGCTGTGCACACTTGTTCCAGGACCCAAACAGAGCTCAACAAGTGCTTAGAAGAATGGCAGAGTGAAGGCTTTCAGGTTACTGGATCGGTGTGTGACGTGTCCTCACCACACGACAGAGAGAAGCTTCTTCAGATAGTTGCTTCCACCTTCAATGGAAAGCTTAACATCTATGTAAACAACGTTGGAACAAACCTCAGAAAACCAACAATTGAGTACAGTGCTGAAGAATATTCAGAGCTGATGACAGTTAATTTAGACTCCTCATTTCATTTGTGTCAACTTGCGTACCCTCTTCTCAAAGCATCTGGAAAGGGATGCATCGTGTTCCTTTCTTCTGTTGCTGGTGTCACCAGCATGGGTACTGGATCTCTGCTCCAAAATCAAGCTTTTGTGGATGATGTGATGTCACGTACCCCACTTAAGCGCATCGCAGAACCGGAAGAAGTTTCATCTTTGGTGACTTTCCTCTGCTTGCCTGCTGCATCGTATATCACTGGACAAGTTATTTGTGTTGATGGAGGAGTCACTGTTAATGGATTTCAACCCAGCATGAGAATTACTTGA 609 0.4532 MYMHAIVSDLAAFGAAVHTCSRTQTELNKCLEEWQSEGFQVTGSVCDVSSPHDREKLLQIVASTFNGKLNIYVNNVGTNLRKPTIEYSAEEYSELMTVNLDSSFHLCQLAYPLLKASGKGCIVFLSSVAGVTSMGTGSLLQNQAFVDDVMSRTPLKRIAEPEEVSSLVTFLCLPAASYITGQVICVDGGVTVNGFQPSMRIT 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01804 202 Gene3D - 4 135 - -
Vimu6g01804 202 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 192 IPR036291 -
Vimu6g01804 202 Pfam Enoyl-(Acyl carrier protein) reductase 136 191 - -
Vimu6g01804 202 PANTHER TROPINONE REDUCTASE 139 194 IPR045000 GO:0016491
Vimu6g01804 202 Pfam short chain dehydrogenase 5 134 IPR002347 -
Vimu6g01804 202 Gene3D - 136 201 - -
Vimu6g01804 202 PRINTS Glucose/ribitol dehydrogenase family signature 188 202 IPR002347 -
Vimu6g01804 202 PRINTS Glucose/ribitol dehydrogenase family signature 67 78 IPR002347 -
Vimu6g01804 202 PRINTS Glucose/ribitol dehydrogenase family signature 114 130 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01804 Vimu-Chr6 16323256 16324766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01804 4 197 Miscellaneous Gene Families AT2G29290 52.101 1.59e-77 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01804 K08081 - gmx:100791265 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01804 6 16323256 16324766 Vimu6g01804 6 16323256 16324766 ECH