Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01792 ATGGCTCTTTCACCACTCACCATACTTGTGGTCATTGCCACCATCTTCCTCCCATCCATTGCTGTGGCCAAGGATATTGTAGTTGGGGATGATCATGGATGGACAGTAGGCTTTGATTACTCTGCTTGGGCTGCTGATAAGACCTTCTTTGTTGGAGACGTACTTGTATTCAAGTATGCTGTTGGAGAACACAATGTGTTCAAAGTGAATGGAACTGCATTCCAGAGCTGCACGGTTCCTCCACCAAGTCAAGCATTGACTACTGGAAGTGACCGTATTGTATTGGCAATTCCTGGGAGAAAATGGTACATATGTGGTGTTGGAAGTCACTGCAGTGCTGGCCAAAAGCTTGTTATCACAGTTCAACCCCAAACACTACCCCCAACCCTACCACCTGCCCCTGCACCTTCACCTTCTGAGCATGGACCTGGTTTTGGTGGATGGCTGTCTAAGAAGATATTAACCATATTTCATTAA 477 0.4633 MALSPLTILVVIATIFLPSIAVAKDIVVGDDHGWTVGFDYSAWAADKTFFVGDVLVFKYAVGEHNVFKVNGTAFQSCTVPPPSQALTTGSDRIVLAIPGRKWYICGVGSHCSAGQKLVITVQPQTLPPTLPPAPAPSPSEHGPGFGGWLSKKILTIFH 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01792 158 CDD Phytocyanin 24 121 - -
Vimu6g01792 158 FunFam Cupredoxin superfamily protein 22 126 - -
Vimu6g01792 158 Pfam Plastocyanin-like domain 34 115 IPR003245 GO:0009055
Vimu6g01792 158 PANTHER BLUE COPPER PROTEIN 22 125 IPR039391 GO:0009055
Vimu6g01792 158 SUPERFAMILY Cupredoxins 23 122 IPR008972 -
Vimu6g01792 158 Gene3D - 22 126 IPR008972 -
Vimu6g01792 158 ProSiteProfiles Phytocyanin domain profile. 24 123 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01792 Vimu-Chr6 16237582 16238227 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01792 6 140 Miscellaneous Gene Families AT2G32300 40.141 6.93e-27 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01792 - - gmx:102668784 242.662