Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01763 ATGGCTTCAGCAACTACATTGTCACTAATGTTACACTTTCTGTTGTTAATATTATGTTCTTCGTTTCACCAAACAAGCTTAGCATTCACATCGCAAGAGTACCAGGAGGCTCTTGAGAAATCCATTCTCTTCTTTGAGGGACAGCGGTCTGGAAAATTGCCTTCCAACCAGCGACTAACATGGAGGGGAGATTCTGGATTGTCCGATGGCTCTTCTTATCATGTAAACCTGGTAGGTGGTTATTATGATGCTGGAGATAACGTTAAGTTTGGGTTGCCGATGGCCTTTACTACAACATTGTTAGCATGGAGTGTGATTGAATTTGGAAGCTCAATGATGGACCAGATTGAAAACGCTAGAGCTGCTATCCGCTGGAGCGCAGATTACCTTCTTAAGGCTGCCACCACCACCCCTGACACATTATATGTCCAAGTAGGAGATCCGAACATGGATCACAAGTGTTGGGAAAGGCCTGAAGATATGGACACTCCACGCAATGTGTATAAGGTATCAGCTCAAAACCCAGGATCAGATGTAGCAGCAGAGACAGCGGCTGCACTGGCAGCTTCTTCAATAGTATTCGGAGATTCGGATCCAGCATACTCCTCCAAATTGCTTCAAGCAGCCATCAAAGTATTCAATTTTGCAGACCGTTACAGGGGTTCTTACAGTGATTCTCTTGGCTCTGTTGTCTGTCCATTCTACTGCTCTTACTCCGGATACCATGAATTCTTGGAGAAAAATTCAGAAGAGTTCCAATTATACAAAGCACATTCAGATAATTACATCTGTTCGCTAATGTCTGGAATACCTGGTTCTCAGGCTCAGTACACCCGAGGGGGGCTTCTTTACAAGGGGAGCGAGAGCAATTTACAGTATGTGACATCGACAAGTCTCCTTCTGTTGACATACGCTAAGTATCTTTCTGCAAACGGGGGCGTTGTCAGATGTGGGACTTCAACGGTCACGGGTGAAAACCTCGTAACACTAGCCAAAACACAAGTTGATTACATTCTGGGCGATAATCCAAGAAAGATGTCGTATATGGTGGGTTTTGGGGAGAATTACCCAAAGCATCTCCATCACAGAGGTTCCTCTCTACCTTCGGTTCGTGCCAGGACTCAGCACATTTCCTGCAACGAGGGGTTTCAATATCTCTATGCAGGCTCTCCCAATCCAAATGAGCTTGTTGGAGCTATCGTAGGTGGTCCTGATAGCAATGATAACTTCTCCGATGATCGAAACAACTATCAGCAGTCAGAGCCAGCAACGTACATCAATGCACCCTTTGTAGGTGCTGTTGCCTATTTCTCTGCTAAACCACCAACCTATTATTAA 1338 0.4507 MASATTLSLMLHFLLLILCSSFHQTSLAFTSQEYQEALEKSILFFEGQRSGKLPSNQRLTWRGDSGLSDGSSYHVNLVGGYYDAGDNVKFGLPMAFTTTLLAWSVIEFGSSMMDQIENARAAIRWSADYLLKAATTTPDTLYVQVGDPNMDHKCWERPEDMDTPRNVYKVSAQNPGSDVAAETAAALAASSIVFGDSDPAYSSKLLQAAIKVFNFADRYRGSYSDSLGSVVCPFYCSYSGYHEFLEKNSEEFQLYKAHSDNYICSLMSGIPGSQAQYTRGGLLYKGSESNLQYVTSTSLLLLTYAKYLSANGGVVRCGTSTVTGENLVTLAKTQVDYILGDNPRKMSYMVGFGENYPKHLHHRGSSLPSVRARTQHISCNEGFQYLYAGSPNPNELVGAIVGGPDSNDNFSDDRNNYQQSEPATYINAPFVGAVAYFSAKPPTYY 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01763 445 Gene3D - 31 245 IPR012341 GO:0005975
Vimu6g01763 445 Gene3D - 246 443 IPR012341 GO:0005975
Vimu6g01763 445 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 410 428 IPR033126 -
Vimu6g01763 445 Pfam Glycosyl hydrolase family 9 34 242 IPR001701 GO:0004553|GO:0005975
Vimu6g01763 445 Pfam Glycosyl hydrolase family 9 249 433 IPR001701 GO:0004553|GO:0005975
Vimu6g01763 445 SUPERFAMILY Six-hairpin glycosidases 32 439 IPR008928 GO:0005975
Vimu6g01763 445 PANTHER ENDO-1,4-BETA-GLUCANASE 13 243 - -
Vimu6g01763 445 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 337 363 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01763 Vimu-Chr6 16011429 16013799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01763 3 438 Glycoside Hydrolase AT1G02800 55.311 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01763 - - gmx:732658 741.11