LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu6g01733	ATGAGAATCACGTTGGAGCCGAGCTCGGAGCCGAGCCCAAGCCGCTCCCAAACTCCCAAAGACGAAGTCGAGTGGGTCCCACTTGCCAAGCACCCTCTCTTCACCTCACACGGCGGCGCCACCGTTTCCGGTTATCGGAATCTCCTGGCCTGGGACGGAGCCTCGCGCCTCTACTTCTGGGACACGAACAGCCGCCTTCTCCACCGCCTATCTCTCCGACTTGGCGACCCCGATCCCTCTTCCGTGCTCGCCTCTTCTCCTTCGAAGGTGTTGCAAGCAGACGCCGAGCTCGATTTCGACGTCCACAAAATCTCCGTCAACAGGAATGGAACAGCGATACTCCTTTTCGGTTCCGAAACGCTCTCTGTTATGTATCTTTACGGACGCGCATCTAAGAAGGACGTGAACTTGATTTGCAGGACTATTACTGTTGGTTCTCAGACATATTCCACTGGTGGCAATAATATTCGGGTGTTACAAGCATTATGGCACCCTTACAGTGATACTCATTTGGGGATTCTTTCTTCTGACTCAGTTTTCAGACTTTTCAACCTTGCTGTGGATCCTTTGCAACCAGAGCAAGAATATTATTTACAGCCTGTCGAGCCTGGTAGATTCAGAAATGCCTCATCAGTGTGCCCAGTAGATTTTTCTTTTGGGGGTGACCACTTATGGGACAGGTTCAGTGTTTTTATTTTGTTCAGTAATGGGGCTATCTATGTACTTTGCCCAGTTGTGCCATTTGGAAGTCTCTTCAAATGTGAGTCTTTGGTAGAAATATACAATGATGCTCACACATTTGGAATAATATCAGCCAACTCTGTTGCTGCGAGTAATTCAAAGTTGGCAATTTCCTGGTTAGAAGCATCATTTCCTGAGTTACAGAACCAAGATACTGAAGGAGACAGCCTGTCCTTGCTAAGAGCTCATGCATATTCTTTGTTTGATGCATCTCTTGTCTTGCAGGGACCTCTGCAAAGAGTAGGTCAGGATGGAAATGGAGATTCGGTAGGTTGTAGCACAGAATGTGAAGGTCGTGCAGTTAGTTTTCTCTACAATTTAGTCAGCAAAGACTCAATTTTGGTGACTGCCTGGAGTGGTGGGCAATTGCAAATAGATGCTCTTGCCGATGAGATCCAACCTGTCTGGTGTGTTGGTAGTCCGCCTCGTCTCCGTGTTGATTCCCATGACCAAATTCTTGGCCTTGCTATGATTTGTGATTCAATTACCTGCAGCAGTCTGGGGAAGGTTGATCATAATGCCTGGTTGGGTAATCCGCCCCCTTTGCTGAGACTGGCTATTGTTGATTTGGCTCTGCCACGAAGAGCAGAAAGTGGTTATAATATTTCTTTGTTCATTGATATGCTTATGCCAGAAAGAATATTTTCCCTTCATGATGGAGGGATTGACTCGATAGTTTTACATTTTCTTCCTTTTACAAGTCAGTCAAATGGCAAGGATGATACAATGAAGACACCGTCTGTGCACCCTGTGTTAAATACTTGCCAGAGTGGATATACCTCAGAACCCTCATTTTGTGGATTTGTGTCTTTATCGGATTCATTTGGATATTCATGGATTGTAGCTATTACACTTTCTCTTGAGTGTGTTGTGCTTGAGATGAAAAGTTGGAATCTCTTGCTTCCTGTAAGCATTGATATGGAGAAGAAACCCATTTCATCAGAGGGGGAATCAAAGGAGAGGGATATACCAACAATAATTAGCAAAGAACTACTTAGTGGACCGAAGGAGGTACTTGTTCCCCATGCCTCTCCAAGTTTGCGTTCTGTTGCAGCTGATTCAATTGAAGGTCGATCGACATTACATCAGTATTTCAAGCTGTTTCATGAAACTTATGTGGAGTATGGACATAAGGTGTACCTGGAGCTCAAGCATCACGCACCTCAGTTGAATAAAATCATTAACGACCAACGTTCTCGCTTAGGCGAAGCACAGCAGAAACTTTTGAACGTTGAGAAGAAAGAGGCTATATTACAGAAAAGGTTAGGTCGTGCTATTCAAATGCACAATTCTCTGGAAGAGCGCTTGCAACAATTAAGGAACTTACCTTGTGCTCACAAAAAACCGCTGTCCAGAGCAGAGCGGCAGTTTAAATCGGAGCTTGACCGCTTTAAGGAAGTTGAGTTGGATGCTTTGCATTCTTCTGTTGATGCGGTAAGTGCAAGGCTGAGAAGGCACTTGCAAGCTTTGAAAGCAAATCAGCAACAGAAAACAGCTGGGAAGAAAATTCATGCTGTAGACAGTAAGATATCCATGCTCAAATCGTCTCTTGAAAAACTCTCACTTGTAAATACTGAGAATTCAAAGAAAGTTAAACTTGTGGAGTCTACATTGAGAAACAAAGAAAGAAGTAGCGGCAGAGAATCAAGCCTGCCTTTGCCCTAA	2406	0.4472	MRITLEPSSEPSPSRSQTPKDEVEWVPLAKHPLFTSHGGATVSGYRNLLAWDGASRLYFWDTNSRLLHRLSLRLGDPDPSSVLASSPSKVLQADAELDFDVHKISVNRNGTAILLFGSETLSVMYLYGRASKKDVNLICRTITVGSQTYSTGGNNIRVLQALWHPYSDTHLGILSSDSVFRLFNLAVDPLQPEQEYYLQPVEPGRFRNASSVCPVDFSFGGDHLWDRFSVFILFSNGAIYVLCPVVPFGSLFKCESLVEIYNDAHTFGIISANSVAASNSKLAISWLEASFPELQNQDTEGDSLSLLRAHAYSLFDASLVLQGPLQRVGQDGNGDSVGCSTECEGRAVSFLYNLVSKDSILVTAWSGGQLQIDALADEIQPVWCVGSPPRLRVDSHDQILGLAMICDSITCSSLGKVDHNAWLGNPPPLLRLAIVDLALPRRAESGYNISLFIDMLMPERIFSLHDGGIDSIVLHFLPFTSQSNGKDDTMKTPSVHPVLNTCQSGYTSEPSFCGFVSLSDSFGYSWIVAITLSLECVVLEMKSWNLLLPVSIDMEKKPISSEGESKERDIPTIISKELLSGPKEVLVPHASPSLRSVAADSIEGRSTLHQYFKLFHETYVEYGHKVYLELKHHAPQLNKIINDQRSRLGEAQQKLLNVEKKEAILQKRLGRAIQMHNSLEERLQQLRNLPCAHKKPLSRAERQFKSELDRFKEVELDALHSSVDAVSARLRRHLQALKANQQQKTAGKKIHAVDSKISMLKSSLEKLSLVNTENSKKVKLVESTLRNKERSSGRESSLPLP	801

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu6g01733	801	PANTHER	NUCLEOPORIN NUP84-RELATED	16	790	IPR037700	GO:0000055\|GO:0000056\|GO:0006913\|GO:0017056
	Vimu6g01733	801	Coils	Coil	641	689	-	-
	Vimu6g01733	801	MobiDBLite	consensus disorder prediction	1	22	-	-
	Vimu6g01733	801	MobiDBLite	consensus disorder prediction	781	801	-	-
	Vimu6g01733	801	MobiDBLite	consensus disorder prediction	1	19	-	-
	Vimu6g01733	801	Pfam	Nuclear pore component	42	220	IPR019321	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu6g01733	K14318		-	gmx:100801853	1408.28

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu6g01733	6	15793432	15798520	Vimu6g01733	6	15793432	15798520	ECH