Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01732 ATGGTTATATCGCTTCTTCTTTTCTCTGCCCCGGTTCTTCTTGTTATCGCCGATGCGCTTCTTCCTTCCGCTCTTCTCTCCACCATTTCCTCCTCTTCTCTCTCCTTGGAAAATCTCGCTTCCCATTTCAACGACTACGATTTCCGATACTCCCTCATTGATATACCCCTCATCTCCATAATACGATCCTTCATCATCTTCTGTGTTTATAGCTTGTGTGACGGACCCAGGCTTTCGCACGGACCTTATTTGGGGATTACGACCATGTGTTCTGTATTGTCTCTGATGTTTGTGTCGTTGAAGGCTGTTTACATCTTCAGTGTTCGGGGGATTGATCGAAGTGGGTATGTTGGAGGGACCGAAATAGCTCTGTTCGTATGCTCTTGTGCGTTGGCCGTGGGGCATGTTGTCGTGGCCTACAGAACAAGTTGCAGGGAAAGAAGAAAGCTTTTGGTATACAAAATTGACATTGAAGCTGTAAGTGTCTCCTCCCATTGCACACGCCATTTTCCTTTCCAACAAAGCTAA 528 0.4621 MVISLLLFSAPVLLVIADALLPSALLSTISSSSLSLENLASHFNDYDFRYSLIDIPLISIIRSFIIFCVYSLCDGPRLSHGPYLGITTMCSVLSLMFVSLKAVYIFSVRGIDRSGYVGGTEIALFVCSCALAVGHVVVAYRTSCRERRKLLVYKIDIEAVSVSSHCTRHFPFQQS 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01732 175 Pfam Cholesterol-capturing domain 30 105 IPR019498 -
Vimu6g01732 175 PANTHER ALPHA/BETA HYDROLASE RELATED PROTEIN 1 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01732 Vimu-Chr6 15789289 15789976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01732 1 160 Miscellaneous Gene Families AT1G80280 45.029 2.13e-33 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01732 - - gmx:100795655 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01732 6 15789289 15789976 Vimu6g01732 6 15789289 15789976 ECH
Vimu6g01732 6 15789289 15789976 Vimu1g00916 1 6382257 6383156 PCT