Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01690 ATGATTCCTCGGCTTCTGGGTGTCTATATAAACCGCCAATTCTTAATCAACGTTCGACATATCCTACGTTCCTTTGTTGCAGCGATTCAGACATCATACGATTTCATTGCCATGTCCAATATCAAATCAGAGTCAGTGTCAGAATCCTCCGTTTCAGAGCCTCCACCGACGCAACCCTCTGTGCCCATTTCCTACCCAATCAAAACACTTGAGGAGTTGGAGTCTCGCTCGTATTTCGACTCCTTTCACTACCCTTTCAACAGGGCTTCGGTTCCCATTCTCAATGGAGGTTCTTCTTCATTGCCCCAGAGGCGCAGATTGCTTGTGTGCCATGACATGGCTGGGGGCTACTTGGATGACAAGTGGATTCAAGGTGGCACTAACCCCGATGCTTATGCCATTTGGCACTGGCACTTGATCGATGTTTTTATCTACTTTTCACACAGTCTCGTTACTCTTCCTCCTCCCTCCTGGACTAACACTGCTCATCGCCACGGCGTTAAGGTGTTGGGGACTTTCATTACTGAATGGGATGAGGGAAGAACTGTCTGTGATACATTGCTTTCAACAAAGGAAACTGCACATATGTATGCAGAACGTCTGGCAGAGCTTGCCGCTGATTTAGGTTTTGATGGGTGGCTAATAAATATGGAAGTGAATTTGGATCCGGGTCAAATTCCTAATTTGATAGAGTTTGTAGACCATTTATCACTAACAATGCATTCTTCTGTTCCTGGATCGTTAGTGCTATGGTATGACAGTGTTACAGTTGATGGTAAATTGAATTGGCAAGATCAACTAAATGAACATAATAAGCCATTCTTTGATATATGTGATGGAATATTTGTGAACTATACATGGAAGGAAGACTATCCAAGGCTCTCTGCAGCAGTTGCCAATGAGCGGAAGTTCGATGTGTACATGGGAATCGATGTATTTGGAAGGAACACATATGGTGGTGGACAGTGGAATGTAGATGTTGCTCTTGATTTACTAAGAAAGAATGATGTCTCTGCTGCAATATTTGCTCCTGGATGGGTCTATGAGACAAAGCAAGCACCAGATTTTGAGACTGCTCAGAATAGTTGGTGGGGTCACGTGGAAAAGTCATGGGGAGTACTGCGAAAATTTCCTGGACCATCACCATTCTACACTAATTTTGATCAGGGACGTGGTTACCATATTTCAGTTGATGGTGACAATGTATCAGATACAACTTGGTGCAACATTTCTTGCCAAGGTTTCCAGCCACAACTTCTGCTTGTTGATCCTTCAAATTCTATTCAAGTTTCTGTAGACTTGAAGGAAGCATCATATAGTGGAGGGGGAAACATTACATTCAAAGGATCCCTTGAAGAGAAAACTTACTTTGAGAGCAAAATATTTCAAGTAGGGTTTCTTTTGAGCGAGTTGCCTGTCCACTTTATCTATACTGTGAAATCGGATAGCAATTCTTCATTAGGACTTAAGCTCGAGTTCACCTCCACAGGCGATGGCAGAAGAGCATCTATTCTTCTTGCATCCCGGGAAGTGAATCACTTTTCAGACAAGTTCAGCAAAGTAATCATGACTCGTGAACGCAAGGGATTTTCCTCTGGATGGGTTATAAATGAAGGTGTAGTTGCAATGAGTGGATACACTTTAACAGAAATCCATGCAGTGTGCTATAGATCAGATTCAAATGACAATGATGGAACTGTGGCTTCCCCATCAGAATATTTTGCACTTCTTGGTCACATCACAATCAAGACTGTGGACTATAAGTCAGATTTTCCTCTGTCTTCTTCCTGGCTAGTTGATGGCACCTGCATAAAATGGACATCAGACCCTCTGGGTTCAAAGACCCTTGATGTTAAGATTTCTTGGAAATTAAAACATGAGAATAGTTATCTATTTCTGAAGTTCAACGTTTACTTGGTAAAATTATCAAAACAAGCAGGTGGCAATCCAGGTACAACATTAGAGGATGTAAAAGAGTACCTTGGAGTAGCACAAGTAAGCTGTTTCTATGTTTCTGACCTCAAAGTTCCTTCAGACACTTCTACTCTCAAATTTATAATACAAGTCTGCGGTGTAGATGGGACAATTCAGGAATTGGACGAGTCTCCATATTATGAATTGGAGGTTGAAGGTCCTTAA 2139 0.4203 MIPRLLGVYINRQFLINVRHILRSFVAAIQTSYDFIAMSNIKSESVSESSVSEPPPTQPSVPISYPIKTLEELESRSYFDSFHYPFNRASVPILNGGSSSLPQRRRLLVCHDMAGGYLDDKWIQGGTNPDAYAIWHWHLIDVFIYFSHSLVTLPPPSWTNTAHRHGVKVLGTFITEWDEGRTVCDTLLSTKETAHMYAERLAELAADLGFDGWLINMEVNLDPGQIPNLIEFVDHLSLTMHSSVPGSLVLWYDSVTVDGKLNWQDQLNEHNKPFFDICDGIFVNYTWKEDYPRLSAAVANERKFDVYMGIDVFGRNTYGGGQWNVDVALDLLRKNDVSAAIFAPGWVYETKQAPDFETAQNSWWGHVEKSWGVLRKFPGPSPFYTNFDQGRGYHISVDGDNVSDTTWCNISCQGFQPQLLLVDPSNSIQVSVDLKEASYSGGGNITFKGSLEEKTYFESKIFQVGFLLSELPVHFIYTVKSDSNSSLGLKLEFTSTGDGRRASILLASREVNHFSDKFSKVIMTRERKGFSSGWVINEGVVAMSGYTLTEIHAVCYRSDSNDNDGTVASPSEYFALLGHITIKTVDYKSDFPLSSSWLVDGTCIKWTSDPLGSKTLDVKISWKLKHENSYLFLKFNVYLVKLSKQAGGNPGTTLEDVKEYLGVAQVSCFYVSDLKVPSDTSTLKFIIQVCGVDGTIQELDESPYYELEVEGP 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01690 712 FunFam Cytosolic endo-beta-N-acetylglucosaminidase 1 isoform A 380 566 - -
Vimu6g01690 712 PANTHER ENDO BETA N-ACETYLGLUCOSAMINIDASE 38 706 IPR032979 GO:0033925
Vimu6g01690 712 Gene3D Glycosidases 57 376 - -
Vimu6g01690 712 Pfam Glycosyl hydrolase family 85 117 394 IPR005201 GO:0005737|GO:0033925
Vimu6g01690 712 CDD GH85_ENGase 108 426 - -
Vimu6g01690 712 Gene3D - 380 561 - -
Vimu6g01690 712 FunFam cytosolic endo-beta-N-acetylglucosaminidase 56 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01690 Vimu-Chr6 15488412 15495760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01690 57 710 Glycoside Hydrolase AT5G05460 56.061 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01690 K01227 - gmx:100804658 1231.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01690 6 15488412 15495760 Vimu6g01690 6 15488412 15495760 ECH