Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01677 ATGAAGCCACACACTCAGGCTTCTTCTTTCGCCACTCCACTCCCGCGCGTGCCTTTCTTTCGCGCCACCGCTTCCTCACGTGACGCCCCGGCGGAATCTCTTCGTGCCGCCGCCGCCGATGAATTCCGTCGCATCTGGACTGCGAAACGCCGCCGCGTCAACCTGTCCGTCCGCCACTCCACATGTGTCGCCGCGGCTTCGAATCCGGGTGGCTCTGGTGGCGATTATAGTCAACCTCGGAGCAGCCGGCGCGGCGTGCTGATAGCACCGTTCCTGGCTGCCGGCGCGTCGGTTCTGTTATCGGCGTCCTCGAGGGCGGAGGAGAAGGCGGCGGAATTGGCTCCGACGGCGCCGAAGCTGGAGGAGGCGAAAAAGGAGGAGGATGAAGTGATAACGTCGAGGATTTACGACGCGGCGGTGATAGGGGAACCGTTGGCGATAGGGAAAGAGAAAGGGAAGGTGTGGGAGAAGTTGATGAATGCGCGAGTGGTGTATTTGGGGGAAGCGGAACAGGTTCCGGTTCGAGACGATAGGGAATTGGAGCTTGAGATTGTGAAGAATTTGTATAGGCGCTGTTCGGAGAAGGAAAAAAAACTGTCTCTTGCGCTGGAAGCTTTTCCCACTAATCTTCAGGAACCGCTCAATCAGTATATTGACAAGAAGATAGATGGAGACACCTTGAAGTCTTATACGTTGCACTGGCCACCTCAAAGATGGCAGGAGTATGAACCTATTCTGAGCTACTGTCGTGAAAATGGAATCCGTGTAGTCGCTTGTGGTACTCCGCTGAAGATCTTGAGAACTGTCCAAGCAGAAGGAATTCGTGGGCTTACAAAGGCTGAACGTAAACTTTATGCTCCTCCAGCTGGGTCGGGCTTTGTATCAGGCTTTACTTCTATCTCACGTAGACCTTCAGTCGATAGTACTCAAAATCTATCCATTCCTTTTGGTCCGAGCTCATACCTTTCTGCCCAGGCCAAAGTAGTTGATGAGTATTCTATGTCCCAGGTTATCTTACAAAATGTGCTTGATGGAGGGTCCACTGGTATGTTAATTGTTGTGACTGGTGCAAGCCATGTTACGTATGGATCTAGAGGAACTGGAGTGCCAGCTAGAATTTCAGGAAAAATACAAAAGAAAAACCAAGTAGTTATATTACTTGACCCTGAAAGACAATTCATTCGCAGAGAAGGAGAAGTTCCCATGGCTGATTTCTTGTGGTATTCTGCTGCCAGACCCTGTAGTAGAAATTGCTTTGATCGTGCTGAGATTGCTCGCGTAATGAATGCTGCTGGGCGGAGGCGAGATGCCCTACCACAGGATCTTCAAAAGGGAATTGATCTTGGTTTAGTATCTCCAGAGGTTTTGCAGAACTTCTTTGATCTAGAGCAGTATCCTCTGATTTCAGAACTCACTCACCGTTTCGGGGGTTTTAGGGAAAGATTGTTGGCAGATCCCAAATTCTTGCACAGGTTAGCCATAGAAGAAGCCATATCAATAACAACTACATTGTTGGCCCAATATGAAAAGCGGAAAGATAATTTTTTCCAAGAGCTTGACTACGTTATTACAGACACTATCAGAGGATCAGTGGTTGATTTTTTTACAGTGTGGCTTCCTGCACCAACTTTGTCATTCCTTTCATATGCTGATGAGATGAAAGCACCTGACAACATTGGTTCTCTAATGGGACTTCTAGGTTCCATCCCGGACAATGCATTTCAAAAGAATCTTGCAGGAACAAACTGGAATCTCAATCATAGAATTGCATCAGTTGTATTTGGTGGGCTAAAACTTGCTAGTGTTGGATTTATTTCAAGCATTGGAGCCGTGGCTTCATCAAATTCTCTATATGGAATCCGTAAATTCCTTAATCCAGCCATTGTCACTGAGCAACGGGTTATAAGGTCACCAATACTGAAAACAGCTGTCATATATGCTTGCTTTCTTGGAATTTCTGCAAATCTCCGTTATCAGATAATTGCTGGGATAGTGGAGCATCGGATTTCTGAACAGTTTGCTTCCCAGACATTCTTTGTAAATATGCTTTCTTTTGTAGCACGGACTGTCAATTCCTATTGGGGAACCCAGCAATGGATTGACCTAGCGCGCTTTACTGGTCTGCAAGTTAGAAAGACAGAGTCGCCAACATCAGATTCTCCGAATAGTGCTGCAATTTTATGCAACGAAGCAGAAGAAGCCACCATTGATGAGATAGAAAAATAA 2226 0.4708 MKPHTQASSFATPLPRVPFFRATASSRDAPAESLRAAAADEFRRIWTAKRRRVNLSVRHSTCVAAASNPGGSGGDYSQPRSSRRGVLIAPFLAAGASVLLSASSRAEEKAAELAPTAPKLEEAKKEEDEVITSRIYDAAVIGEPLAIGKEKGKVWEKLMNARVVYLGEAEQVPVRDDRELELEIVKNLYRRCSEKEKKLSLALEAFPTNLQEPLNQYIDKKIDGDTLKSYTLHWPPQRWQEYEPILSYCRENGIRVVACGTPLKILRTVQAEGIRGLTKAERKLYAPPAGSGFVSGFTSISRRPSVDSTQNLSIPFGPSSYLSAQAKVVDEYSMSQVILQNVLDGGSTGMLIVVTGASHVTYGSRGTGVPARISGKIQKKNQVVILLDPERQFIRREGEVPMADFLWYSAARPCSRNCFDRAEIARVMNAAGRRRDALPQDLQKGIDLGLVSPEVLQNFFDLEQYPLISELTHRFGGFRERLLADPKFLHRLAIEEAISITTTLLAQYEKRKDNFFQELDYVITDTIRGSVVDFFTVWLPAPTLSFLSYADEMKAPDNIGSLMGLLGSIPDNAFQKNLAGTNWNLNHRIASVVFGGLKLASVGFISSIGAVASSNSLYGIRKFLNPAIVTEQRVIRSPILKTAVIYACFLGISANLRYQIIAGIVEHRISEQFASQTFFVNMLSFVARTVNSYWGTQQWIDLARFTGLQVRKTESPTSDSPNSAAILCNEAEEATIDEIEK 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01677 741 SUPERFAMILY EreA/ChaN-like 153 409 - -
Vimu6g01677 741 CDD ChanN-like 162 386 IPR007314 -
Vimu6g01677 741 Pfam Protein RETICULATA-related 480 664 IPR021825 -
Vimu6g01677 741 Gene3D - 147 412 - -
Vimu6g01677 741 PANTHER PROTEIN RETICULATA-RELATED 2, CHLOROPLASTIC-RELATED 33 739 - -
Vimu6g01677 741 Pfam Haem-binding uptake, Tiki superfamily, ChaN 154 373 IPR007314 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01677 Vimu-Chr6 15394037 15399565 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01677 - - gmx:100810366 1271.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01677 6 15394037 15399565 Vimu6g01677 6 15394037 15399565 ECH