Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01666 ATGTCTACTTCGAAACCCATCTCCTCCTTCAGACTCACCTCACTCCTCCGCTCTCAGAAAGACCCCTCCCTTGCCGTTCAACTCTTCCTCAACCCAAATCCTAACCACCCCTCCGACCACCCCTTCCGTCATTCCCTCCGCTCCTATGAACTCATTATCACCAAACTTGCCCAAGCCAAAATGTTCCCCCAAATGGAACAGCTCCTCTACCAACTCTACACTCAAACGCGCTTCCCTACCCCCGAACCCCTCCTCCGCCACGTCATCGCTGCCTACGCCCGCGCCGGCCTCCCATCGCGTGCCCTCCGCACCTTCCTCTCCATCCCAGCCCCCTCACTCCGCTCCTTCAACTCCCTCCTCCACGCGCTGCTCGTCTGCCGTGACTTCGCCTCATTCACGCGCCTCCTGCCGCATCTCCCCCGCTTTCGCGGTCCCGACGCATGCTCCTACAACATCCTCATCCACGCGTGTTCTCTAACAAACAACCGCGGTCGGGCGTGGAAGCTGTTCAACGAAATGCGTAGGCGAGGTGTTCGTCCGAATCAAAATACGTTCGGAACTCTGATTAACTTGCTGTGCAAAAGCCCTCAATTGCACCTTTCCCAGGCGTTTAAGGTGAAGGAAGAGATGTATAGGGTTTTTAAAATTAAGCCTAATGTTTTTGTGTACACTAGTTTGATTAAAGCTGTTTGCGAGGTGGGTGATTTTGATTCCGCGGTTAGGTTGAAAGATGAGATGGTGAGGAACAATTTGAAGCTTGATGCTGTGGTGTACAACACTTTGGTTTCAGGATTTTTAAAAGGAGGGAAGAAGGATATAGGATTTAGGGTGTTGGAGGAAATGAAGATTGGTGGTGTGAAGCCGAATTCTGTGACGTGTAATGTGTTAATTGGGGAGTTTTGTAGGGAGGGAAAGTTTGAAGAGGCTTATAGGATTTTGAATGATGGGTTAGAGGGAGTGAAGCCTGATGTTTTTGGCTACAATGTGGTTATTGGTTGGCTGTGTGAAGAGGGGAAATGGAGGGAGGCTGATGATTTATTTGAGGACATGCCAAGGCGACAGTGTGTTCCTGATGTTATGACTTACCGCACTTTGTTTGATGGGCTTTGTAAGTGTATGCAGTTTGAGGAAGCTGGGTTGCTTTTAGGGGAGATGATTTTTAAAGGCTATGTTCCTCGTTCCTCCAGTTTGAATGAGTTTGTTGGTATGGTGTGTGAGGAAGGGGATTTTGAGTTACTAGGGAAGGTTTTGAGTGGTTTGGTAGGTGGGGGATTTGACTGTCAGGATCTATGGAAAACTTTGGTCTTATTGCTCCACTTCGCTCTGCAATTCAAAAATGTTGTTGACGCCAATTTCATACCCAGAAAACCAACTTGTGTTTTTCCCTCCAAATCAACCACCCCAATTTCCTGCACCCTCCAAGGAACAGTTGCTGAACCAAAGTCTACAGCTGTTGCTGAACCGCTTTTGCTTAATGCAGTTCATGTGGTAGAAGTTGAAAGACCACCGGTTTGGCTCATGAGGCAAGCAGGGAGGTACATTAAGGCAGGTTTAGAGCATCCTAGTTTGAGTTACCAAACCATCTGTGAGAAATATCCTTCATTCCGTGAAAGATCTGAAAATGTCGATCTTGTGGTGGAAATTTCCCTGCAACCATGGCATGTTTTCAAGCTTGATGGAGTGATTTTATTCTCAGACATTCTTACCCCACTTTCTGGAATGAATATACCCTTTGATATTGTGAAGGGTAAGGGTCCTGTGAATGATACAGCTGCAGTTCTGGGTTTTGTTGGGGCACCGTTCACTCTGGCATCATATGTGGTTGAAGGTGGTTCATCTAAAAACTTCTCAAAAATTAAAAGATTGGCTTTCTCTGAATCCAAGATCCTGCACTCTTTACTGCAAAAGTTTACAACGTCAATGGCAAGATACATTCAATACCAAGCTGATAATGGAGCTCAAGCTGTTCAGATCTTTGATTCATGGGCAACGGAACTTAGTCCAGTGGTTGAAGAATTTAGTTTGCCTTGA 2031 0.4677 MSTSKPISSFRLTSLLRSQKDPSLAVQLFLNPNPNHPSDHPFRHSLRSYELIITKLAQAKMFPQMEQLLYQLYTQTRFPTPEPLLRHVIAAYARAGLPSRALRTFLSIPAPSLRSFNSLLHALLVCRDFASFTRLLPHLPRFRGPDACSYNILIHACSLTNNRGRAWKLFNEMRRRGVRPNQNTFGTLINLLCKSPQLHLSQAFKVKEEMYRVFKIKPNVFVYTSLIKAVCEVGDFDSAVRLKDEMVRNNLKLDAVVYNTLVSGFLKGGKKDIGFRVLEEMKIGGVKPNSVTCNVLIGEFCREGKFEEAYRILNDGLEGVKPDVFGYNVVIGWLCEEGKWREADDLFEDMPRRQCVPDVMTYRTLFDGLCKCMQFEEAGLLLGEMIFKGYVPRSSSLNEFVGMVCEEGDFELLGKVLSGLVGGGFDCQDLWKTLVLLLHFALQFKNVVDANFIPRKPTCVFPSKSTTPISCTLQGTVAEPKSTAVAEPLLLNAVHVVEVERPPVWLMRQAGRYIKAGLEHPSLSYQTICEKYPSFRERSENVDLVVEISLQPWHVFKLDGVILFSDILTPLSGMNIPFDIVKGKGPVNDTAAVLGFVGAPFTLASYVVEGGSSKNFSKIKRLAFSESKILHSLLQKFTTSMARYIQYQADNGAQAVQIFDSWATELSPVVEEFSLP 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01666 676 SUPERFAMILY UROD/MetE-like 489 676 IPR038071 -
Vimu6g01666 676 Gene3D - 476 676 IPR038071 -
Vimu6g01666 676 Gene3D Tetratricopeptide repeat domain 77 197 IPR011990 GO:0005515
Vimu6g01666 676 Pfam PPR repeat family 145 194 IPR002885 -
Vimu6g01666 676 Pfam PPR repeat family 322 371 IPR002885 -
Vimu6g01666 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 319 IPR002885 -
Vimu6g01666 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Vimu6g01666 676 Gene3D Tetratricopeptide repeat domain 318 436 IPR011990 GO:0005515
Vimu6g01666 676 Gene3D Tetratricopeptide repeat domain 198 317 IPR011990 GO:0005515
Vimu6g01666 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Vimu6g01666 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Vimu6g01666 676 Pfam Uroporphyrinogen decarboxylase (URO-D) 489 587 IPR000257 GO:0004853|GO:0006779
Vimu6g01666 676 Pfam Uroporphyrinogen decarboxylase (URO-D) 588 675 IPR000257 GO:0004853|GO:0006779
Vimu6g01666 676 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 503 512 IPR000257 GO:0004853|GO:0006779
Vimu6g01666 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Vimu6g01666 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Vimu6g01666 676 Pfam Pentatricopeptide repeat domain 241 300 IPR002885 -
Vimu6g01666 676 NCBIfam pentatricopeptide repeat 327 359 IPR002885 -
Vimu6g01666 676 NCBIfam pentatricopeptide repeat 149 181 IPR002885 -
Vimu6g01666 676 NCBIfam pentatricopeptide repeat 361 392 IPR002885 -
Vimu6g01666 676 NCBIfam pentatricopeptide repeat 256 289 IPR002885 -
Vimu6g01666 676 NCBIfam pentatricopeptide repeat 291 314 IPR002885 -
Vimu6g01666 676 NCBIfam pentatricopeptide repeat 222 255 IPR002885 -
Vimu6g01666 676 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 594 610 IPR000257 GO:0004853|GO:0006779
Vimu6g01666 676 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 12 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01666 Vimu-Chr6 15325246 15329571 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01666 146 436 Glycosyltransferase AT1G05670 29.110 2.47e-32 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01666 - - gmx:100781017 663.299