Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01650 ATGTCGCCAAAATATCGGACTCTGGACAATCGTCCAATTAATCAGTGGAAGGTTACGGAGCTGAGAGAGGAGCTGAGGAGAAGGAAGTTAAACTCCAAAGGTCTGAAGGATGATTTGGTAAAGCGGTTGGGTGAATGTCTTCGTCTTGAAAGGGAGGTTGAGCAGGATTCTAAGAAGGAGGAGGCCAATGGTTTTGATGATGGTCATGTAGACGGGGAAAAAGATTCTGCGGCGGTTACCATGGATGCTGAAGTCGTTGACGCAACTGACAAGGAAAGTACCCAAACCTTTGAGACTGCTGAAAAGGGGAAGAGTGATGTAGTTGAACCGATCGAAACAGAAAATGAGGAAAAGTTTCCGGGGTTTTTCGATGAAGACAGCAATAAGAATGACAAGCAGGATGGTATTGCCGGCCAAGTTGACATTAATAATAGTGTGTCAACCATGGATGAAGAAGTTGAACACGAGGGCTTTCCCTCCGGTGTAGATTCTGGAAATGTGGTAGAGACCACAATTACAGCCACTGACAGTGTAGTAAAAGGAGTGGTAGTCAGCGGTGAGGATTCATATTGTGCAGAAAAGAACAATGAGTTTTCTGCAGCAAAGCTAGAGAATGAGGAGTCAAAGGCGCAGCTGGATGGTGAGGATACAAAGCCCCAAATGGATTCTGAGACAAAGCCCCTGCACGAGGATATTGTGCCCGACTCTTCTGTTCCAGAAAACCAGGTATCTGAGGTCAACCCTAGTTTAGGGTCTCAAGTAAAATCTGATTCTATTTCTACTGATTCTGTGTCAATTAATCAAAAGAATGAACTAAAGGATACTATAATTACTGATAATGTCAAATTAGAACAAGATATTATTAAGCCAGAGATGGTGGAAGAACCATCCAGAAATGATGTACCTGTTTCTTATGATGAATCACATGCAATGGATGTTGGAGGGCGGCATGAGAAAAAGACATCTGTTGAAGAAAATATCAATAATGTTTCAAGTCCAGACTTGAATAAGACCAATAGCAGTGATGATGTGGGGTATCCAGAAAAGTTGAATTTAGACAGAAGTTCTGGTGATGATTCCATGGAAGAGGATTTGCCTGAGACTAAGCAAATTGATTCTAAGTTTAATGTTGATGAACTTAGAAAGAAAGTGGAGAGTATTGAAGAGCCTATTATGAAGGAGGAAAGTAGGACTATAGCTGTGGGAGATGGTGTATCTGGAGGAAAAAACGATACCCACCAAGATATTGACATTAGTCCCGTTGCCCCAACTGAGAAACGAAAATTCCATGAACAAACATCGGTTGGGAACAATGAGCCTGCAAAAAGGCAACGCAGGTGGAACACTGAAACAGTTAAAGGTCCAGATCCACAAAGCACTACTCCCAGGCCTGCTACTACACCTAGAGAAGAGCCAATTGCTCTGAAACGCAACCTCTCTAGGTCTGATTCCTCTGCTACTGATGACACACCTAAAGAGCGCATTGTTCCACCATCACCAAGGTCCCCAACTAATTCCCTCAGGATTGATCGATTCCTCCGTCCATTTACTCTGAAAGCTGTGCAAGAACTTCTTGGTAAGACTGGGAATGTTAGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTTACTTACTCATCTGTTGAAGAAGCCATTGAGACACGGAATGCTGTGTATAATTTGCAATGGCCACCAAATGGTGGGCGTCTCTTAGTTGCTGAGTATGTTGATCCTGAAGAAGTGAAAATGAAGTTAGAACCTCCTGTACAGACTGCCCCCATCAGCACTGCTCCAGTAGTTCCGCCTGTGGTCCCCACATCACAGCCAGAGCCATCCCCTCGGCTGCACAGGGAGCAGCATTCAGTTCCAACTATGCTTCCACCTCCACCACCATTGTCAAAAAACCCACCAGTAGCAAGAGATCGGCTTCCATCACCACCACCTCTTCCAGAGAAAGTTGACCCACCTATTGTCACTCTTGACGATCTCTTCCGCAAAACCAAAGCAACTCCTCGGATCTACTACTTGCCTTTGACCGATGAGCAAGTTGCTGCAAAACTTGCTGCACAGGGTAAAGATCCGAGGAGGTGGGCCAAATCTGGTCGTGTTTTGTCTCGGGAAGAAATTGTAGTTCCCAATGCATATTGA 2154 0.4452 MSPKYRTLDNRPINQWKVTELREELRRRKLNSKGLKDDLVKRLGECLRLEREVEQDSKKEEANGFDDGHVDGEKDSAAVTMDAEVVDATDKESTQTFETAEKGKSDVVEPIETENEEKFPGFFDEDSNKNDKQDGIAGQVDINNSVSTMDEEVEHEGFPSGVDSGNVVETTITATDSVVKGVVVSGEDSYCAEKNNEFSAAKLENEESKAQLDGEDTKPQMDSETKPLHEDIVPDSSVPENQVSEVNPSLGSQVKSDSISTDSVSINQKNELKDTIITDNVKLEQDIIKPEMVEEPSRNDVPVSYDESHAMDVGGRHEKKTSVEENINNVSSPDLNKTNSSDDVGYPEKLNLDRSSGDDSMEEDLPETKQIDSKFNVDELRKKVESIEEPIMKEESRTIAVGDGVSGGKNDTHQDIDISPVAPTEKRKFHEQTSVGNNEPAKRQRRWNTETVKGPDPQSTTPRPATTPREEPIALKRNLSRSDSSATDDTPKERIVPPSPRSPTNSLRIDRFLRPFTLKAVQELLGKTGNVSSFWMDQIKTHCYVTYSSVEEAIETRNAVYNLQWPPNGGRLLVAEYVDPEEVKMKLEPPVQTAPISTAPVVPPVVPTSQPEPSPRLHREQHSVPTMLPPPPPLSKNPPVARDRLPSPPPLPEKVDPPIVTLDDLFRKTKATPRIYYLPLTDEQVAAKLAAQGKDPRRWAKSGRVLSREEIVVPNAY 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01650 717 MobiDBLite consensus disorder prediction 325 345 - -
Vimu6g01650 717 SMART sap_9 13 47 IPR003034 -
Vimu6g01650 717 Gene3D SAP domain 13 63 IPR036361 -
Vimu6g01650 717 MobiDBLite consensus disorder prediction 237 263 - -
Vimu6g01650 717 Pfam RNSP1-SAP18 binding (RSB) motif 654 692 IPR032552 -
Vimu6g01650 717 Coils Coil 191 211 - -
Vimu6g01650 717 MobiDBLite consensus disorder prediction 451 466 - -
Vimu6g01650 717 MobiDBLite consensus disorder prediction 288 302 - -
Vimu6g01650 717 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 4 695 - -
Vimu6g01650 717 MobiDBLite consensus disorder prediction 474 490 - -
Vimu6g01650 717 MobiDBLite consensus disorder prediction 347 396 - -
Vimu6g01650 717 MobiDBLite consensus disorder prediction 310 324 - -
Vimu6g01650 717 MobiDBLite consensus disorder prediction 52 73 - -
Vimu6g01650 717 CDD RRM_ACINU 504 584 IPR034257 -
Vimu6g01650 717 MobiDBLite consensus disorder prediction 594 656 - -
Vimu6g01650 717 MobiDBLite consensus disorder prediction 199 233 - -
Vimu6g01650 717 MobiDBLite consensus disorder prediction 199 263 - -
Vimu6g01650 717 SUPERFAMILY RNA-binding domain, RBD 498 585 IPR035979 GO:0003676
Vimu6g01650 717 MobiDBLite consensus disorder prediction 596 611 - -
Vimu6g01650 717 MobiDBLite consensus disorder prediction 85 132 - -
Vimu6g01650 717 MobiDBLite consensus disorder prediction 85 137 - -
Vimu6g01650 717 ProSiteProfiles SAP motif profile. 13 47 IPR003034 -
Vimu6g01650 717 MobiDBLite consensus disorder prediction 625 656 - -
Vimu6g01650 717 Pfam SAP domain 13 43 IPR003034 -
Vimu6g01650 717 SUPERFAMILY SAP domain 13 49 IPR036361 -
Vimu6g01650 717 MobiDBLite consensus disorder prediction 288 507 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01650 K12875 - gmx:100786288 1108.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01650 6 15210419 15213339 Vimu6g01650 6 15210419 15213339 ECH