Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01640 ATGTGCCAGATCTCGATCTCGATGCGGTGGCGGTTGCTGCTATTGTTGTTGTTGGAGCTAACGGCACGCGCAATGCCGCTTCCGATCACGTTTTCCGCGCGCCTCGTTCACCGCTTCGCTGACGAAATCAAACCGGTTCGAATTCCGACCGGCGACTGGCCAGACCGGAAGAGCTTGCGCTACTACCACATGCTTCTCGCCGACGACATTCTCAGACGCAAGATCAAACTCGGAGGCGCTCGCTACCAGCTTCTGTTTCCTACTCACGGTAGCAAAACATTGTCGCTCGGCAACGACTTCGGCTGGTTACATTACACGTGGATTGATATAGGAACACCGAGTACTTCGTTTCTCGTGGCGTTGGACGCAGGCAGTGATCTTCTTTGGATTCCGTGTGACTGCGTACAGTGTGCTCCATTGTCATCGAGTTACTATTCCAATCTGGATAGAGATCTGAATGAATATAGTCCGTCTCGATCGTTATCCAGTAAGCATCTATCTTGCAGTAATCACTGGTGTGATAATGGTTCGAATTGTAAAAGTTCCCAGCAGCAGTGTCCGTACATGGTCAGTTACTTGTCAGATAATACATCGAGTTCTGGATTGTTAGTTGAGGACATACTGCATCTTCAGTCTGGTAGCGGTTTATCAAACTCCTCTGTTCAGGCTCCAGTTGTTCTTGGATGTGGTATGAAGCAAAGTGGTGGTTATTTGGATGGGGTTGCCCCCGATGGTCTATTAGGTTTGGGACCTGGGGAGAGTTCTGTTCCAAGTTTTCTTGCCAACTCAGGATTAATCCACAATTCCTTTTCCTTGTGCTTTAATGAAGATGATTCTGGTAGAATATTTTTTGGGGACCAAGGACCAACCATCCAACAGTCTACCCCGTTCTTGCCTTTGGATGGATTATATTCAACGTACATTGTTGGAGTGGATTCATCTTGTATTGGGAATACTTGTCTTAAAATGACAAGTTTTAAAGCACAGATTGATAGCGGAACGTCTTTTACATTTCTTCCTGGCCATGTTTATGGAGTAATAGCCGAGGAGTTTGATCAACAAGTAAATGGTTCAAGATCTAGTTTTGAAGGATCTCCTTGGGAGTATTGCTATGTACCCAGTTCAAAAGAGTTGCCAAAGGTTCCCAGCTTAACTCTCGTGTTCCAACAGAATAACAGTTTTGTGGTCTATAATCCCGTGTTTGTATTCTATGGCAATGAGGGAGTCGTTGGATTTTGTTTAGCCATCCAGCCAACAGAAGGGGATATGGGAACAATTGGACAGAACTTCATGACTGGATACCGTTTGGTATTTGATCGGGAAAACAAGAAGCTAGCGTGGTCACGCTCAAATTGTCAGGATTTGAGTGTAGGTAAGAGGATGCCCCTTTCTCCAAATGAGACTTCACCAAACCCATTACCTTCAGATGAGCAACAAAGAACGAACGGGCATGCAGTTGCTCCAGCTGTTGCTGGAAGAGCTCCCCACAAATCTTCAGCAGCTTTATCTCGGATGAATTCATCGTTCCGGGTATATTGGCATTATTGCTATTTCTTTCTTATATTTCAACTCGTGTCTGCCTCTTACTGA 1590 0.4553 MCQISISMRWRLLLLLLLELTARAMPLPITFSARLVHRFADEIKPVRIPTGDWPDRKSLRYYHMLLADDILRRKIKLGGARYQLLFPTHGSKTLSLGNDFGWLHYTWIDIGTPSTSFLVALDAGSDLLWIPCDCVQCAPLSSSYYSNLDRDLNEYSPSRSLSSKHLSCSNHWCDNGSNCKSSQQQCPYMVSYLSDNTSSSGLLVEDILHLQSGSGLSNSSVQAPVVLGCGMKQSGGYLDGVAPDGLLGLGPGESSVPSFLANSGLIHNSFSLCFNEDDSGRIFFGDQGPTIQQSTPFLPLDGLYSTYIVGVDSSCIGNTCLKMTSFKAQIDSGTSFTFLPGHVYGVIAEEFDQQVNGSRSSFEGSPWEYCYVPSSKELPKVPSLTLVFQQNNSFVVYNPVFVFYGNEGVVGFCLAIQPTEGDMGTIGQNFMTGYRLVFDRENKKLAWSRSNCQDLSVGKRMPLSPNETSPNPLPSDEQQRTNGHAVAPAVAGRAPHKSSAALSRMNSSFRVYWHYCYFFLIFQLVSASY 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01640 529 Gene3D Acid Proteases 287 454 IPR021109 -
Vimu6g01640 529 PRINTS Pepsin (A1) aspartic protease family signature 328 339 IPR001461 GO:0004190|GO:0006508
Vimu6g01640 529 PRINTS Pepsin (A1) aspartic protease family signature 110 130 IPR001461 GO:0004190|GO:0006508
Vimu6g01640 529 PRINTS Pepsin (A1) aspartic protease family signature 424 439 IPR001461 GO:0004190|GO:0006508
Vimu6g01640 529 ProSiteProfiles Peptidase family A1 domain profile. 104 448 IPR033121 -
Vimu6g01640 529 Pfam Xylanase inhibitor N-terminal 105 286 IPR032861 -
Vimu6g01640 529 Pfam Xylanase inhibitor C-terminal 326 448 IPR032799 -
Vimu6g01640 529 SUPERFAMILY Acid proteases 98 453 IPR021109 -
Vimu6g01640 529 MobiDBLite consensus disorder prediction 456 482 - -
Vimu6g01640 529 FunFam Aspartyl protease family protein 1 289 454 - -
Vimu6g01640 529 Gene3D Acid Proteases 91 286 IPR021109 -
Vimu6g01640 529 FunFam Aspartyl protease family protein 1 90 286 - -
Vimu6g01640 529 MobiDBLite consensus disorder prediction 456 492 - -
Vimu6g01640 529 PANTHER ASPARTYL PROTEASES 28 445 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01640 Vimu-Chr6 15136005 15140364 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01640 97 455 Miscellaneous Gene Families AT1G44130 29.167 2.03e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01640 - - gmx:100782209 946.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01640 6 15136005 15140364 Vimu6g01640 6 15136005 15140364 ECH