Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01636 ATGGCCAATGCACTACAAAACGCCGCCATCTCCACAATCACGTTTGGAGACCACTATTCCGTTTCTCGTTGCTTTTTTCCATCCCTATCCACACTTCCTTTCAGGTTACCTCGATTCTCTTCTGCCATTCCACTTCAGCATCACTTCACTGTCAAAGGAAATCACGTAGAGCTCAACAAAAGGGTGGTACTGATAAAGGCAAGAAATAAGAGTGATTTTGATGAAGTAGAAGTTGATGTTTCTTTGAGCCACAGAGTTAATGCTGTGAAGCCTTCCAAAACTATGGCAATAAGCGATCATGCCGCTGCTCTGTTACAAGCTGGAGTTCCTGTTATTCGCTTAGCGGCTGGAGAACCTGACTTTGACACACCCACTGTCATAGCCGAGGCGAGTTTTGCTGGGATGAATGCAATTCGTGACGGTCATACTAGATATACTCCTAATGTCGGAACATTGGAATTACGCCAAGCAATATGTCACAAGCTAAGAGTATGTTTCATGACTGTTTCTGTAGAGGAGAATGGAATTACATATACCCCAGATGAGATTTTGGTCAGTAATGGAGCGAAACAGAGTGTTGTTCAAGCAGTGCTTGCAGTTTGTTCCCCAGGAGATGAGGTTATCATTCCAGGTCCATTCTATGTGAGTTATCCAGAAATGGCAAGACTAGCAGATGCAAATCCTGTGATTATTCCAACCCACATATCTAATAACTTTCTTTTGGATCCGAAACTGCTTGAAGCCAACCTCACAGAAAGATCAAGACTACTTATTCTTTGTTCACCTTGTAATCCAACAGGATCTGTCTACTCTAAGAAATTACTTGAAGAGATAGCCCAAATTGTAGAAAAGCACCCCAGGCTTCTGGTTCTCTCTGATGAAATTTATGAACACATAATTTATTCACCTGCAACTCACACAAGCTTTGCATCTTTAACTGGAATGTGGGACAGAACACTAACAGTGAATGGGTTTTCCAAGACATTTGCCATGACTGGGTGGCGTCTTGGGTATATTGCTGGTCCAAAACACTTTGTTGCTGCCTGTGGAAAAATTCAAAGTCAGTTCACTTCAGGGGCGAGCAGTATATCTCAGAAAGCTGGTGTTGCTGCATTAGGACTAGGCTATGCAGGTGGAGAGGCTGTTTCCAACATGGTGAAAGCCTTCAGGGAAAGAAGGGATTTCTTGGTTGAAAGCTTTTCAAAAATGGACGGTGTGAAAATATCTGAACCACAGGGGGCATTTTATCTCTTCATTGATTTCAGCTCTTATTATGGAAGAGAAGCTGAAGGGTTTGGCTTAATTGAGAATTCTGACTCCCTCTGTCGATACCTGCTGGAAAAGGGCCTGGTTGCACTGGTGCCGGGAAGTGCATTTGGAGATGATAGTTGCATCCGCATTTCTTATGCAGAATCTCTTACTGTTTTAAAGACAGCAGTAGAGAGAATTAAGAAAGCGCTTATCCCTCTAAGCTCTGCTGCGCTTCTTTAA 1491 0.4299 MANALQNAAISTITFGDHYSVSRCFFPSLSTLPFRLPRFSSAIPLQHHFTVKGNHVELNKRVVLIKARNKSDFDEVEVDVSLSHRVNAVKPSKTMAISDHAAALLQAGVPVIRLAAGEPDFDTPTVIAEASFAGMNAIRDGHTRYTPNVGTLELRQAICHKLRVCFMTVSVEENGITYTPDEILVSNGAKQSVVQAVLAVCSPGDEVIIPGPFYVSYPEMARLADANPVIIPTHISNNFLLDPKLLEANLTERSRLLILCSPCNPTGSVYSKKLLEEIAQIVEKHPRLLVLSDEIYEHIIYSPATHTSFASLTGMWDRTLTVNGFSKTFAMTGWRLGYIAGPKHFVAACGKIQSQFTSGASSISQKAGVAALGLGYAGGEAVSNMVKAFRERRDFLVESFSKMDGVKISEPQGAFYLFIDFSSYYGREAEGFGLIENSDSLCRYLLEKGLVALVPGSAFGDDSCIRISYAESLTVLKTAVERIKKALIPLSSAALL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01636 496 Gene3D Aspartate Aminotransferase, domain 1 95 481 IPR015422 GO:0003824
Vimu6g01636 496 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 324 337 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vimu6g01636 496 PANTHER ASPARTATE AMINOTRANSFERASE 80 487 - -
Vimu6g01636 496 CDD AAT_like 112 485 - -
Vimu6g01636 496 SUPERFAMILY PLP-dependent transferases 82 487 IPR015424 -
Vimu6g01636 496 Gene3D - 144 374 IPR015421 GO:0003824
Vimu6g01636 496 FunFam Aspartate aminotransferase 144 374 - -
Vimu6g01636 496 Pfam Aminotransferase class I and II 110 483 IPR004839 GO:0009058|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01636 Vimu-Chr6 15099818 15102772 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01636 K15849 - gmx:100780254 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01636 6 15099818 15102772 Vimu6g01636 6 15099818 15102772 ECH