Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01624 ATGTATACTGTAACATTGCTGATGCTTTCTCCATGGGTTGATGACAGGAAAACTTTATTACTTGCATCTGGTATCTTAATTGCTGGAGGAACAGCTGCATATATACAGTCAAGGTTTAGAGTTAGTAAACCTGATTTATTTGGACATTGCAATGGGAAAAACAGCGATAGTGAAGTCACAGAGGAGGTTGGCGTTAATGCAACAAAAAATAAACAAAAGAAAGGGTTGAAGTCACTCCAACTCCTTGCTTCAATTATACTGACTGACATGGGAAAATTAGGTGCAAGGGATCTTTTAGGTTTAGTTGCTATAGCGGTGTTGCGGACTGCTTTGAGCAACAGGCTCGCTAAAGTGCAAGGCTTCCTATTTCGTGCTGCTTTTCTTCGGCGTGTACCTTTGTTTCTTCGGCTAATTTCAGAAAACATTCTTTTGTGTTTCCTTTTGTCAACCATTCATTCTACGTCAAAGTATATAACAGGGACTTTGAGTTTACATTTCAGAAGAATATTGACCAAGATTATTCATTCCCACTATTTTGAGAACATGGTGTATTACAAAATATCGCATGTTGATGGTCGGATAACTAACCCAGAGCAAAGAATTGCGAGTGATGTGCCAAGGTTCTGTTCAGAGTTAAGTGAAATTGTACAGGATGATCTCACAGCCGTTACTGATGGACTTCTATACACCTGGCGTTTGTGTTCATATGCTAGCCCAAAATATGTCTTCTGGATATTGGCCTATGTACTCGGAGCTGGTGCTGCAATCAGAAACTTTTCTCCTTCTTTTGGAAAACTTATGTCTAAAGAGCAGCAATTGGAAGGAGAGTATCGACAGCTTCACTCACGATTGAGGACTCACTCAGAAAGTGTAGCATTCTATGGTGGAGAGAGGAGAGAAGAAGCCCATATTCAACAGAAGTTTAAAACCTTGGTTAGCCATGTGCATAATGTGCTACATGACCATTGGTGGTTTGGGATGATTCAAGACTTATTATTGAAGTACCTTGGTGCTACTGTTGCTGTTATTTTGATTATTGAACCTTTCTTTTCTGGTCATTTAAGGCCTGACAGCTCAACTTTAGGGCGGGCAGAGATGTTAAGCAATCTTAGATATCATACTAGTGTCATAATTTCTTTATTTCAGTCTCTAGGAACTCTTTCTATCAGTGCAAGACGGCTCAATCGTCTCAGTGGGTATGCTGATCGCATTTGTGAATTAATGGCTGTATCAAGGGACTTGAGTTTGGTGGACGAGAAATCTTCCCTTCAAAGGAAAGCAAGTAGAAATTGCATAAGTGAAGCTAACTACATTGAATTTGACGGTGTGAAGGTTGTGACCCCCACTGGTAATGTCTTGGTGGATGATCTAACTCTTAGGGTTGAATCAGGATCAAATCTTTTGATTACAGGTCCAAATGGCAGTGGCAAAAGCTCTCTTTTCCGGGTTCTAGGTGGCCTTTGGCCACTGATATCTGGACATATTGTGAAACCTGGAATTGGCTCTGATCTTAATAAGGAGATTTTCTATGTTCCCCAAAGGCCATACACTGCTGTAGGAACACTTCGAGATCAGTTGATTTATCCTATTACTGCAGATCAAGAGATTGAACCACTCACAGACCGCGGGATGGTGGAGCTGTTAAAAAATGTTGACCTGGAATATCTGTTGGATCGTTACCCTCCTGAAAAGGAGGTAAACTGGGGTGAGGAACTTTCATTGGGTGAGCAACAGAGATTGGGCATGGCAAGACTTTTCTACCACAAGCCTAAATTTGCTATTCTAGATGAGTGCACAAGTGCTGTGACTACTGATATGGAAGAACGGTTTTGTGCTAAAGTTAGGGCAATGGGAACATCATGCATTACCATATCACATCGTCCAGCATTGGTTGCATTTCATGATGTGGTTTTATCCTTAGATGGTGAAGGAGGATGGAGTGTACACTATAAAAGGGAGGGCTCTCCTACTGAAAGGGAGATTGATACAATGAACGCATCAGAAACAAAACGACAGAGTGATGCAAAGGCAGTTCAACGTGCATTTTCCATGAGCAAAAAGGATTTTGCATTCTCAAATCCAAAGGCACAGTCGTATTTTTCAGAGGTGATATCATCATCTCCTTCTATGAATCATACAATTTCACCTTCTCTTGTTCCCCAACTCCGTTGTAATACAAGGGTATTGCCATTGAGAGTATCTGCCATGTGCAAAGTATTGGTACCCACTATACTGGATAAACAAGGTGCACAACTGCTCGCTGTCGCATTTCTCGTTGTTTCAAGAACATGGGTCTCAGATCGTATTGCATCACTAAATGGTACCACTGTGAAGTTTGTTTTGGAGCAGGATAAAGCTTCCTTTATTCGGTTAATTGGTTTAAGTGTTCTTCAAAGTGCTGCATCTGCTTTCATTGCTCCTTCTATAAGGCACTTGACATCTAGACTAGCACTGGGGTGGCGAATTCGTTTGACACAACATCTGTTAGAAAACTACTTGAGAAACAACGCATTCTACAAGTCACACCAAGGAGTGATTGGGTATGTGAAATCTGACATTTCCATCGTCAGCCATGGGGACGATAACCCTGGAAACTGGAAAGCAGCTATACAATCTTCTGTAGAGAGTGACATGGAGTATGAGGTCTTTCACATGGCAAGCAAAAATATTGACGCGGATCAGAGGATAACTCAAGACTTGGAGAAGTTGACCTCAGACTTGTCTGGATTGGTCACTGGATTGGTAAAGCCATCTGTGGATATTTTGTGGTTCACGTGGAGAATGAAGTTGTTAACAGGTCAGAGGGGGGTTGCCATACTCTATGCCTACATGCTACTTGGTCTTGGATTTCTAAGAACTGTTACTCCTGATTTTGGTGATTTGATAAGCCAAGAGCAACAACTTGAAGGAATGTTTAGGTTCATGCATGAAAGGCTCTGTACTCATGCTGAATCTGTTGCTTTCTTTGGAGGTGGAGCTCGAGAAAAAGCTATGGTTGAATCAAGATTTAGGGAGCTTCTCTCCCACTCCAAATACCTTCTAAAAAAGAAGTGGCTATTTGGTATACTTGATGATTTTATCACAAAGCAACTCCCTCATAATGTGACTTGGTTGCTGAGCTTATTATATGCTATGGAACATAAGGGAGACCGAGCTTCGATAAATACTCAGGGTGAGCTGGCACATGCATTGAGGTTCTTAGCATCTGTTGTTTCTCAAAGCTTTTTAGCTTTTGGGGACATTCTCGAGTTGAACAGAAAGTTTGTAGAGCTTTCTGGTGGTATTAATAGGATTTTTGAGCTTGAAGAACTTCTGGATGCAGCACAGTCTGGCGACTCTATCAATGGAAGTATTACATTTCCAATGAGGGATTATCATGCCAAAGATGCTATTTCCTTTTCTAAGGTTGATATTGTAACCCCTTCCCAGAAGATTTTGGCCAGAGAGTTGACATGGGACATTGAGCTTGATAGAAGCCTACTTGTTACTGGTCCAAATGGAAGTGGGAAAAGTTCCATTTTCAGAGTTCTTAGAGGACTTTGGCCAATTGCGAGTGGAAGACTCTCTAGACCATCTGATGATGCGGATCTAGAGGCTGGATCAGGTTCTGGCATCTTTTATGTTCCTCAGCGGCCTTACACTTGCTTGGGAACATTGCGGGATCAAATCATATACCCACTGTCCCTTGAGGAAGCAGAGTTGAGAGCATTGAAGATGTACGGAAAAGGTGAGAACCATGACCCTAGAAATTTGTTGGACAAACACTTGCAAGTTATCCTAGAGAATGTTCGGTTGAATTATCTTCTAGAAAGAGACAGTAGAGGCTGGGATGCAAATCTAAACTGGGAAGACATACTCTCTCTTGGAGAACAGCAGAGGTTAGGCATGGCACGGTTGTTCTTCCATAAGCCTAAATTTGGTATTCTGGACGAGTGCACCAATGCAACTAGCGTTGATGTCGAGGAACACTTATATGGGTTAGCGAAAAATATGGGAATCACAGTTGTTACTTCCTCACAACGTCCCGCTTTAATTCCATATCACTCCATGGAATTGCGTCTGATTGACGGTGAGGGTAATTGGGAACTTCGTTCGATCAAGCAATGA 4107 0.4176 MYTVTLLMLSPWVDDRKTLLLASGILIAGGTAAYIQSRFRVSKPDLFGHCNGKNSDSEVTEEVGVNATKNKQKKGLKSLQLLASIILTDMGKLGARDLLGLVAIAVLRTALSNRLAKVQGFLFRAAFLRRVPLFLRLISENILLCFLLSTIHSTSKYITGTLSLHFRRILTKIIHSHYFENMVYYKISHVDGRITNPEQRIASDVPRFCSELSEIVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGAAIRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSESVAFYGGERREEAHIQQKFKTLVSHVHNVLHDHWWFGMIQDLLLKYLGATVAVILIIEPFFSGHLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRICELMAVSRDLSLVDEKSSLQRKASRNCISEANYIEFDGVKVVTPTGNVLVDDLTLRVESGSNLLITGPNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNKEIFYVPQRPYTAVGTLRDQLIYPITADQEIEPLTDRGMVELLKNVDLEYLLDRYPPEKEVNWGEELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYKREGSPTEREIDTMNASETKRQSDAKAVQRAFSMSKKDFAFSNPKAQSYFSEVISSSPSMNHTISPSLVPQLRCNTRVLPLRVSAMCKVLVPTILDKQGAQLLAVAFLVVSRTWVSDRIASLNGTTVKFVLEQDKASFIRLIGLSVLQSAASAFIAPSIRHLTSRLALGWRIRLTQHLLENYLRNNAFYKSHQGVIGYVKSDISIVSHGDDNPGNWKAAIQSSVESDMEYEVFHMASKNIDADQRITQDLEKLTSDLSGLVTGLVKPSVDILWFTWRMKLLTGQRGVAILYAYMLLGLGFLRTVTPDFGDLISQEQQLEGMFRFMHERLCTHAESVAFFGGGAREKAMVESRFRELLSHSKYLLKKKWLFGILDDFITKQLPHNVTWLLSLLYAMEHKGDRASINTQGELAHALRFLASVVSQSFLAFGDILELNRKFVELSGGINRIFELEELLDAAQSGDSINGSITFPMRDYHAKDAISFSKVDIVTPSQKILARELTWDIELDRSLLVTGPNGSGKSSIFRVLRGLWPIASGRLSRPSDDADLEAGSGSGIFYVPQRPYTCLGTLRDQIIYPLSLEEAELRALKMYGKGENHDPRNLLDKHLQVILENVRLNYLLERDSRGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEHLYGLAKNMGITVVTSSQRPALIPYHSMELRLIDGEGNWELRSIKQ 1368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01624 1368 CDD ABCD_peroxisomal_ALDP 438 646 - -
Vimu6g01624 1368 Pfam ABC transporter transmembrane region 2 737 841 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g01624 1368 Pfam ABC transporter transmembrane region 2 83 350 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g01624 1368 Pfam ABC transporter transmembrane region 2 880 1043 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g01624 1368 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 880 1364 - -
Vimu6g01624 1368 Pfam ABC transporter 455 600 IPR003439 GO:0005524
Vimu6g01624 1368 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 435 642 IPR027417 -
Vimu6g01624 1368 Gene3D ABC transporter type 1, transmembrane domain 94 413 IPR036640 GO:0005524|GO:0016020
Vimu6g01624 1368 Gene3D - 424 696 IPR027417 -
Vimu6g01624 1368 ProSitePatterns ABC transporters family signature. 572 586 IPR017871 GO:0005524|GO:0016887
Vimu6g01624 1368 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1131 1366 IPR003439 GO:0005524
Vimu6g01624 1368 SMART AAA_5 1156 1367 IPR003593 GO:0016887
Vimu6g01624 1368 SMART AAA_5 463 642 IPR003593 GO:0016887
Vimu6g01624 1368 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 142 332 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g01624 1368 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 438 669 IPR003439 GO:0005524
Vimu6g01624 1368 CDD ABCD_peroxisomal_ALDP 1131 1361 - -
Vimu6g01624 1368 ProSitePatterns ABC transporters family signature. 1286 1300 IPR017871 GO:0005524|GO:0016887
Vimu6g01624 1368 Pfam ABC transporter 1149 1314 IPR003439 GO:0005524
Vimu6g01624 1368 Gene3D - 1123 1360 IPR027417 -
Vimu6g01624 1368 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1121 1357 IPR027417 -
Vimu6g01624 1368 SUPERFAMILY ABC transporter transmembrane region 115 408 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01624 Vimu-Chr6 14964847 14979630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01624 16 1368 Acyl Lipid Metabolism Gene Families AT4G39850 74.963 0.0 2072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01624 K25819 - gmx:100813765 2365.5