Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01621 ATGGGAAAAAGGCAATCTTTACGCAACAAAGCAACCAACTTTGTTTCTGTCCTTCTCAACCCCATCTCGGACTCCGACGCTCCCAAACCCTCCTCCAAGCACTCTCCACCCACTCCAACACCAACACCTCCTTCCGGAGAAGTAGGTGGATCAGAGAATGATGAAGAAGTTAACCGTGGTTTAGCTGATGGGCCTGATACTTCATCCTTCACTGCGTTTCTCTATTCTTTTTTGTCTTCCTCTGATCCTGGAGATAATGCAAACTCGCACGCGCAGAGTGATGATCGCAAAGGTGCTGCACCTGATCACAACCCTTTACCAGACTCGTTGCTGAAGGAAAATGTTGGGAGGAAAAGTTTGTTTTCCAAAAGCAAGCAATCACTTGGCAGAGCCATTCGCAAAATTGGTGGATTTCGCTATCATGATCGCAGAGATAACCTTGAAATGAAATTGGACGACGGGAGTGGCTCTAAGGTTTCTGGTGTTGTTGAGATGAGGCGTATTGAACCTGTGCAAGAGTCTGTGACTGTGCCTTTGGATGATCTTCCTGAAATTTCTGAACCTTCGGTTCTCCTTTCGGATAGTATGAGAAATGTTCTATATGTTTCTCTTCCACCGCTTATTCACGGAAGGAAATGGTTGTTGTTATACAGCACTTGGAGGCATGGTATATCACTTTCCACTCTTTACCGGAGAAGCATGATTTGGCCTGGATTGAGTTTGCTGATTGTTGGAGATAAAAGAGGAGCAGTATTTGGCAGCATTGTTGAAGCTCCTCTCAGATCATCTAGCAAGAAGAAATACCAGGGAACAAACAATACATTTGTTTTCACAAATATCTCTGGTCACCCTGTCATATATCGCCCAACAGGAGTCAATCGCTATTTCACACTTTGCAACACTGACTATTTAGCAATTGGTGGAGGAGGTCATTTTGCACTTTATCTGGATGGTGATCTATTGAATGGTTCAAGTTCAGTCTCAGAAACGTATGGGAATCCTTGCCTTGCAAATTCTGAAGATTTTGAAGTGAAGGAAGTAGAGTTATGGGGCTTTGTATATGCTTCAAAATATGAGGAAGTGCTAGCAATGAGCAGAACAGAAGCACCTGGGATCTGCCGATGGTGA 1128 0.4406 MGKRQSLRNKATNFVSVLLNPISDSDAPKPSSKHSPPTPTPTPPSGEVGGSENDEEVNRGLADGPDTSSFTAFLYSFLSSSDPGDNANSHAQSDDRKGAAPDHNPLPDSLLKENVGRKSLFSKSKQSLGRAIRKIGGFRYHDRRDNLEMKLDDGSGSKVSGVVEMRRIEPVQESVTVPLDDLPEISEPSVLLSDSMRNVLYVSLPPLIHGRKWLLLYSTWRHGISLSTLYRRSMIWPGLSLLIVGDKRGAVFGSIVEAPLRSSSKKKYQGTNNTFVFTNISGHPVIYRPTGVNRYFTLCNTDYLAIGGGGHFALYLDGDLLNGSSSVSETYGNPCLANSEDFEVKEVELWGFVYASKYEEVLAMSRTEAPGICRW 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01621 375 MobiDBLite consensus disorder prediction 82 111 - -
Vimu6g01621 375 PANTHER NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED 19 354 - -
Vimu6g01621 375 SMART 109ultra 189 353 IPR006571 -
Vimu6g01621 375 MobiDBLite consensus disorder prediction 18 66 - -
Vimu6g01621 375 ProSiteProfiles TLDc domain profile. 190 353 IPR006571 -
Vimu6g01621 375 Pfam TLD 215 352 IPR006571 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01621 Vimu-Chr6 14948930 14952014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01621 212 361 EF-hand Containing Proteins AT5G06260 30.625 4.50e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01621 - - gmx:100804124 612.453