Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01617 ATGGGTGCTGCGGGTTCCAAGCTCGAGAAAGCTCTCGGCGACCAATTCCCCGAAGGGGAACGCTACTTTGGCCTCGAGAATTTCGGCAATACTTGTTACTGCAACAGCGTTTTGCAGGCACTATACTTCTGTGTTCCTTTTCGAGAACAACTGCTAGAGTATTATGCAAATAACAAGAGCTTGGCAGATGGTGAGGAAAATCTTTTGACTTGCTTGGCCGACTTATTTTCACAGATAAGTTCTCAGAAGAAGAAAACAGGTGTTATTGCTCCCAAACGATTTGTTCAGAGGTTGAAAAAACAGAATGAACTCTTCCGTAGCTATATGCACCAGGATGCTCACGAATTCTTGAACTTTTTGCTAAATGAACTTGTTGACATCCTGGTGAGAGAGGCCAAGTCTGCTGCAAAACATGATCAAGAAACATCACCACCTTCTGAAAAGGCTGCAAATGGACCTAATAATGGACTACCTAATGGTGCTAAAAAAGAGCCTTTAGTTACTTGGGTGCACAAAAATTTTCAGGGAATACTCACCAACGAAACTAGGTGCCTGCGTTGTGAAACTGTGACTGCTAGGGATGAAATATTTTTTGACTTGAGCCTTGATATTGAACAAAATAGTTCAATTACAAGTTGTTTGAAGAACTTCAGTTCAACGGAGACATTGAATGCTGAAGACAAATTTTTTTGTGACAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGAATGAAGATAAAGAAACCACCTCACGTCTTGGTCATACACCTTAAGCGTTTTAAATACATTGAACAGCTGGGACGCTACAAGAAGCTGTCTTACAGGGTTGTCTTCCCTCTTGAGCTGAAGTTAAGCGATACTGTTGAAGATGCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTTCATGTTGGGAGTGGGCCCAACCACGGGCATTATGTAAGCCTTGTGAAAAGCCACAACCACTGGTTATTTTTTGATGACGAAAATGTTGAGATGATTGATGAGTCTGCTGTTCAGACATTTTTTGGGTCATCGCAAGAGTATTCCAGCAACACAGACCATGGTTACATTTTGTTCTATGAGAGCATTGGCTCTGGTGACAGGAACTAG 1113 0.4178 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYANNKSLADGEENLLTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILVREAKSAAKHDQETSPPSEKAANGPNNGLPNGAKKEPLVTWVHKNFQGILTNETRCLRCETVTARDEIFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHVLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSDTVEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSSQEYSSNTDHGYILFYESIGSGDRN 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01617 370 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 23 364 IPR028889 -
Vimu6g01617 370 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 24 364 - -
Vimu6g01617 370 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Vimu6g01617 370 MobiDBLite consensus disorder prediction 136 162 - -
Vimu6g01617 370 CDD Peptidase_C19G 24 362 - -
Vimu6g01617 370 Pfam Ubiquitin carboxyl-terminal hydrolase 23 361 IPR001394 GO:0004843|GO:0016579
Vimu6g01617 370 Gene3D Cysteine proteinases 5 363 - -
Vimu6g01617 370 SUPERFAMILY Cysteine proteinases 21 363 IPR038765 -
Vimu6g01617 370 FunFam Ubiquitin carboxyl-terminal hydrolase 3 5 363 - -
Vimu6g01617 370 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 295 313 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01617 Vimu-Chr6 14926688 14931322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01617 24 335 Miscellaneous Gene Families AT4G31670 25.938 6.69e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01617 K11842 - gmx:100787737 721.465