Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01613 ATGGCTTTCCCAACACACACACACACACAATATTTTTCATCTTTGTTCTCCGAGTTGGAGATTGTAATTAAATTAATTCATTTTCCTTGCCGTGTTTCAAGCAAGCCAAGCTTCATGGCTGCCCCAAATTCAAGCTTCTGTTCTCGAGATTCCTCGCGTGCTCTTTTTGACAAAGTTTCTTTGCCAAAATTACATGGTCGCAGGGGATCAAGGTTGATAGTTAGAGCAGATGCAGATTACTATTCTATCCTAGGGGTCTCAAAAAATTCTAGCAAATCTGAAATTAAGAGTGATTATAGATATTCTGTTCCTTCAAATGCAGTCAGCCAAGGATTTACTGATTCAAACAGTTTAAATACCACCATCATGAATGAAACTTATCGGAAGCTTGCCCGGAGTTATCATCCTGATGTTAACAAAGAACCTGATGCAGAAAAGAAATTTAAAGAAATTAGTAATGCATACGAGGTCTTGTCAGATGATGAGAAAAGATCCATATATGATACATATGGAGAGGCTGGTCTTAAAGGTTCAGGAATGGGTATGGGGGATTTCAGCAATCCTTTTGACCTGTTTGAGACACTGTTTGAGGGCATGGGTGGCATGGGGGGCAGCAGAAGTTCTTGGAATGGAGCAGTTGAGGGTGAAGACGAGTATTACAGTCTTGTTTTGAACTTCAAAGAAGCTGTTTTTGGGGTGGAAAAGGAGATCGAGATTCGGCGATTAGAGAACTGTGGAACTTGCAATGGTTCAGGAGCTAAACCAGGGACCAAATCATCTAAGTGTAACACTTGTGGTGGCCAGGGTCGGGTTGTTCAATCGACGAGGACTCCATTAGGCATCTTTCAGCAGTCTATGACTTGCTCTTCTTGCAATGGAGCTGGTGAAATTTCAACACCTTGCAATACATGTTCTGGGGAAGGTCGAGTGAGGAAGACAAAGCGGATAAGTATCAAGGTTCCTGCTGGTGTGGATTCTGGAAGCCGGTTAAGGGTCCGCAATGAAGGTAATGCTGGAAGGCGTGGGGGTCCTTCCGGGGACCTCTTTGTTGTTCTTGAAGTTATCCCAGATCCGGTGCTTAAACGGGACGACACAAACATTTTATACACATGTAAAATATCTTACATTGATGCAATCTTGGGCACTACTGTTAAGGTTCCTACTGTAGATGGCATGGTGGATTTAAAAATCCCATCTGGGACTCAACCAAGCTCAACACTTGTTATGAGTAAGAAAGGTGTTCCCCTGCTGAACAAGAAGAATATGAGGGGTGATCAATTGGTTAGGGTGCAAGTTGAAATCCCCAAAAAACTGAGCAAAGATGAGAGGAAACTTATTGAGGAACTTGCAGATTTAAGCAAAGGCAAGACTGCTGCCACCAGTGGTAGGAGATAA 1395 0.428 MAFPTHTHTQYFSSLFSELEIVIKLIHFPCRVSSKPSFMAAPNSSFCSRDSSRALFDKVSLPKLHGRRGSRLIVRADADYYSILGVSKNSSKSEIKSDYRYSVPSNAVSQGFTDSNSLNTTIMNETYRKLARSYHPDVNKEPDAEKKFKEISNAYEVLSDDEKRSIYDTYGEAGLKGSGMGMGDFSNPFDLFETLFEGMGGMGGSRSSWNGAVEGEDEYYSLVLNFKEAVFGVEKEIEIRRLENCGTCNGSGAKPGTKSSKCNTCGGQGRVVQSTRTPLGIFQQSMTCSSCNGAGEISTPCNTCSGEGRVRKTKRISIKVPAGVDSGSRLRVRNEGNAGRRGGPSGDLFVVLEVIPDPVLKRDDTNILYTCKISYIDAILGTTVKVPTVDGMVDLKIPSGTQPSSTLVMSKKGVPLLNKKNMRGDQLVRVQVEIPKKLSKDERKLIEELADLSKGKTAATSGRR 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01613 464 Gene3D - 355 463 - -
Vimu6g01613 464 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 232 312 IPR036410 -
Vimu6g01613 464 ProSiteProfiles dnaJ domain profile. 79 171 IPR001623 -
Vimu6g01613 464 Hamap Chaperone protein DnaJ [dnaJ]. 76 458 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vimu6g01613 464 Gene3D - 245 308 - -
Vimu6g01613 464 SUPERFAMILY Chaperone J-domain 119 204 IPR036869 -
Vimu6g01613 464 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 41 458 - -
Vimu6g01613 464 CDD DnaJ_C 216 438 - -
Vimu6g01613 464 ProSiteProfiles Zinc finger CR-type profile. 232 313 IPR001305 GO:0031072|GO:0051082
Vimu6g01613 464 SUPERFAMILY Chaperone J-domain 46 100 IPR036869 -
Vimu6g01613 464 FunFam Chaperone protein dnaJ 1, mitochondrial 355 462 - -
Vimu6g01613 464 SUPERFAMILY HSP40/DnaJ peptide-binding domain 213 367 IPR008971 GO:0006457|GO:0051082
Vimu6g01613 464 Gene3D - 215 350 - -
Vimu6g01613 464 FunFam Molecular chaperone DnaJ 237 313 - -
Vimu6g01613 464 Pfam DnaJ C terminal domain 220 435 IPR002939 -
Vimu6g01613 464 SMART dnaj_3 78 163 IPR001623 -
Vimu6g01613 464 ProSitePatterns Nt-dnaJ domain signature. 148 167 IPR018253 -
Vimu6g01613 464 PRINTS DnaJ domain signature 143 163 IPR001623 -
Vimu6g01613 464 PRINTS DnaJ domain signature 81 99 IPR001623 -
Vimu6g01613 464 PRINTS DnaJ domain signature 163 182 IPR001623 -
Vimu6g01613 464 PRINTS DnaJ domain signature 127 142 IPR001623 -
Vimu6g01613 464 CDD DnaJ 79 160 IPR001623 -
Vimu6g01613 464 CDD DnaJ_zf 245 308 IPR001305 GO:0031072|GO:0051082
Vimu6g01613 464 Pfam DnaJ domain 123 168 IPR001623 -
Vimu6g01613 464 NCBIfam molecular chaperone DnaJ 124 451 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vimu6g01613 464 FunFam Putative Mitochondrial DnaJ chaperone 299 350 - -
Vimu6g01613 464 SUPERFAMILY HSP40/DnaJ peptide-binding domain 360 446 IPR008971 GO:0006457|GO:0051082
Vimu6g01613 464 Gene3D DnaJ domain 76 208 IPR036869 -
Vimu6g01613 464 Pfam DnaJ central domain 245 308 IPR001305 GO:0031072|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01613 Vimu-Chr6 14895122 14898737 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01613 K03686 - gmx:100786143 695.656