Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01605 ATGACGTCATCGGTAGTCGAAGGTGGAAGCGAAGAGGCCAAACGCGAGCCCTCTGATTTGGGTACCGAAAGCATCAATCTGACGGCTGAAAACCTTCTACTTCCTTATGAAATATTCTTGAGAGCAGCGTCTTCCCTCAAGGACAAGGTTGTGGAGGAAACTTGGAACCGGAGAGACCAGGTGGTTGATCCGACGGTGTATTCGGGACTATTGGGCACTGCCTTCACTTGTTTGCGGTCGTACCAGGTTACCGGTTGCCGGAACGACTTGCTGTTATGCAGAGAGATCGTTGACACGTGTGTCACCGCTGCACGTGCCTCGCTCAGTGGAGGCGTTTACTCGCTTGGTGCCGTCGTTGCCAATCACATGGGGGACCTCAGAAAGCGTGACTTGTTTTTGGCTCTGTTCATTGAGGTGGCAAAAGAGAAAGCCCTACCAGTAGGACCAGAGGAAGGTGGTTTTGGAATGTCATATGATCTTATGTATGGACGTGCTGGGTTCTTATGGGGTGCGCTATTCCTAAACAAGAACCTAGGAGAAGAAGCAGTGCCAAAGGACATTCTTGTACCGATCATTGATGCAGTGTTGGCTGGTGGTAGAGCAGGAGCGTCTGATATTAAAGACTGTCCATTGATGTATAGATGGCACGGAACAAGGTACCTTGGTGCAGCAAACGGCCTTGCTGGTATCCTTCATGTGCTGCTTCATTTTCCACTTCCAAGTGAGGATGCTGAAGATGTCAAGGGAACTTTGAGGTACCTCATGAGTAAGCGTTTCCCTCGCAGTGGAAACTACCCCTCCAGTGAAGGGAATCCAAGGGATAAGTTAGTGCAATGGAGTCATGGTGCAACTGGCATGGCCATCACTTTGTGCAAAGCAGCACAACTGGTTTTGTGGGATGTGCAAACTTTACCTTACAAGCTGGTTTTGTGGGATGTGCAAACTTTACCTTACAAGCTGGTTTTGTGGGATGTGCAAACTTTACCTTACAAGTTGGTTTTGTGGGATGTGCAAACTTTACCTTACAAGCTGGTTTTGTGGGCTGTGCAAACTTTACCTTACAAGCTGGTTTTGTGGGATGTGCAAACTTTATCTTACAAGCTGGTTTTGTGGGATGTGCAAACTTTATCTTACAAGCTGGTTTTGTGGGATGTGCAAACTTTACCTTACAAGCTGGATGTGCAAATCTTACTTTACAAGCTGGTTTTGTGGGATGTGCAAATCTTACCTTACAAGCTGGTTTTATGGGATGTGCAAATCTTACCTCACAAACTGGTTTTGTGGGATGTGCAAATCTTACCTTACAAACTGGTGTTTCCTAATGACAGAGAACTTCGAGATGCAGCAATAGAAGCAGGGGAAGTTGTGTGGAAAAGTGGATTGGTGAAGAAGGTGGGACTAGCAGATGGGATATCTGGAAATGCCTATGCCTTTCTTTCCCTGTACCGACTCACTAAAGAGAGTATTTACGAAGAGAGAGCAAAATCATTCGCTTCCTTCTTGTATGACAATGCAAAATCTCTTGCTCCTGCCAGTGGCTATTCACTCTTCCAAGGTCTTGCTGGGGCAACATGCCTCTGGTTTGATCTGCTTCAACCACAAAACTCTAGCTTCCCAGGTTATGAATTATAG 1632 0.4651 MTSSVVEGGSEEAKREPSDLGTESINLTAENLLLPYEIFLRAASSLKDKVVEETWNRRDQVVDPTVYSGLLGTAFTCLRSYQVTGCRNDLLLCREIVDTCVTAARASLSGGVYSLGAVVANHMGDLRKRDLFLALFIEVAKEKALPVGPEEGGFGMSYDLMYGRAGFLWGALFLNKNLGEEAVPKDILVPIIDAVLAGGRAGASDIKDCPLMYRWHGTRYLGAANGLAGILHVLLHFPLPSEDAEDVKGTLRYLMSKRFPRSGNYPSSEGNPRDKLVQWSHGATGMAITLCKAAQLVLWDVQTLPYKLVLWDVQTLPYKLVLWDVQTLPYKLVLWDVQTLPYKLVLWAVQTLPYKLVLWDVQTLSYKLVLWDVQTLSYKLVLWDVQTLPYKLDVQILLYKLVLWDVQILPYKLVLWDVQILPHKLVLWDVQILPYKLVFPNDRELRDAAIEAGEVVWKSGLVKKVGLADGISGNAYAFLSLYRLTKESIYEERAKSFASFLYDNAKSLAPASGYSLFQGLAGATCLWFDLLQPQNSSFPGYEL 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01605 543 MobiDBLite consensus disorder prediction 1 21 - -
Vimu6g01605 543 Pfam Lanthionine synthetase C-like protein 61 295 IPR007822 GO:0031179
Vimu6g01605 543 Pfam Lanthionine synthetase C-like protein 441 543 IPR007822 GO:0031179
Vimu6g01605 543 Gene3D - 430 543 IPR012341 GO:0005975
Vimu6g01605 543 PANTHER LANC-LIKE PROTEIN 38 297 - -
Vimu6g01605 543 SMART LANC_like_2 60 543 IPR007822 GO:0031179
Vimu6g01605 543 PRINTS LanC-like protein superfamily signature 220 236 IPR007822 GO:0031179
Vimu6g01605 543 PRINTS LanC-like protein superfamily signature 276 296 IPR007822 GO:0031179
Vimu6g01605 543 PRINTS LanC-like protein superfamily signature 158 173 IPR007822 GO:0031179
Vimu6g01605 543 PRINTS LanC-like protein superfamily signature 63 81 IPR007822 GO:0031179
Vimu6g01605 543 SUPERFAMILY LanC-like 440 543 - -
Vimu6g01605 543 Gene3D - 3 307 IPR012341 GO:0005975
Vimu6g01605 543 CDD euk_LANCL 66 539 - -
Vimu6g01605 543 SUPERFAMILY LanC-like 53 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01605 Vimu-Chr6 14841885 14845358 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01605 - - gmx:100785406 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01605 6 14841885 14845358 Vimu6g01605 6 14841885 14845358 ECH