Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01603 ATGATATGGGCCGAGACCCAAATAAAGAATGCAGGAAAACTGTTTCGGCAAGAGCTTTTTGGATCACACATTCGAAGTTCTACCAGGTTAGCCTTTCGCATGGCCCGTACAAAACAAACTGCTCGTAAATCAACTGGAGGAAAGGCACCCAGGAAGCAGCTTGCTACAAAGGCTGCTCGTAAGTCTGCGCCTACCACTGGTGGTGTAAAGAAGCCACATCGTTATCGTCCCGGTACCGTTGCTCTTCGTGAGATTAGGAAATACCAGAAGAGTACCGAGCTTTTGATTAGGAAACTCCCCTTCCAAAGATTGGTTCGTGAAATTGCTCAGGATTTCAAGACCGATCTTCGTTTCCAGAGCCATGCTGTTCTAGCTTTGCAAGAGGCCGCAGAGGCATATCTTGTTGGGCTCTTTGAAGACACTAATTTGTGTGCCATTCATGCTAAGCGTGTGACTATCATGCCCAAGGATATCCAGCTGGCAAGAAGGATTCGAGGGGCAAGAAAGGTTCAATTGTTTTCTTTTCTGAAACTTTGTTTCGGCTTGTATACACAGATGGCCCGTACGAAGCAAACTGCTCGTAAGTCAACGGGAGGAAAAGCTCCTCGGAAGCAGCTTGCAACTAAGGCTGCACGTAAGTCTGCACCAACCACCGGTGGTGTGAAGAAACCTCATCGTTATCGTCCTGGTACTGTCGCTCTTCGTGAGATTAGGAAATACCAGAAGAGTACCGAGCTTCTGATCAGGAAACTCCCCTTCCAGAGGTTGGTTCGTGAAATCGCTCAGGACTTCAAGACTGATCTGCGTTTCCAGAGCCACGCGGTGCTTGCATTGCAAGAAGCGGCTGAGGCATATCTTGTTGGACTCTTCGAGGACACTAATCTTTGTGCCATTCATGCTAAGCGTGTAACTATTATGCCCAAAGACATTCAGCTCGCAAGAAGAATTCGTGGCGAGCGTGCCTGA 966 0.4814 MIWAETQIKNAGKLFRQELFGSHIRSSTRLAFRMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGARKVQLFSFLKLCFGLYTQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01603 321 Gene3D Histone, subunit A 187 321 IPR009072 GO:0046982
Vimu6g01603 321 Gene3D Histone, subunit A 35 169 IPR009072 GO:0046982
Vimu6g01603 321 FunFam Histone H3.3 238 321 - -
Vimu6g01603 321 ProSitePatterns Histone H3 signature 2. 100 108 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vimu6g01603 321 MobiDBLite consensus disorder prediction 35 74 - -
Vimu6g01603 321 MobiDBLite consensus disorder prediction 191 226 - -
Vimu6g01603 321 FunFam Histone H3 35 83 - -
Vimu6g01603 321 ProSitePatterns Histone H3 signature 1. 200 206 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vimu6g01603 321 FunFam Histone H3.3 86 169 - -
Vimu6g01603 321 PANTHER HISTONE H3 186 319 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vimu6g01603 321 SUPERFAMILY Histone-fold 35 166 IPR009072 GO:0046982
Vimu6g01603 321 ProSitePatterns Histone H3 signature 2. 252 260 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vimu6g01603 321 FunFam Histone H3 187 235 - -
Vimu6g01603 321 PRINTS Histone H3 signature 283 299 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vimu6g01603 321 PRINTS Histone H3 signature 299 320 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vimu6g01603 321 PRINTS Histone H3 signature 219 240 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vimu6g01603 321 PRINTS Histone H3 signature 202 216 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vimu6g01603 321 PRINTS Histone H3 signature 243 260 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vimu6g01603 321 PRINTS Histone H3 signature 188 202 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vimu6g01603 321 PRINTS Histone H3 signature 265 283 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vimu6g01603 321 Pfam Core histone H2A/H2B/H3/H4 186 317 IPR007125 GO:0003677
Vimu6g01603 321 Pfam Core histone H2A/H2B/H3/H4 34 165 IPR007125 GO:0003677
Vimu6g01603 321 ProSitePatterns Histone H3 signature 1. 48 54 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vimu6g01603 321 SMART h35 67 169 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vimu6g01603 321 SMART h35 219 321 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vimu6g01603 321 SUPERFAMILY Histone-fold 187 318 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01603 Vimu-Chr6 14828112 14832138 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01603 K11253 - shr:100927348 501.13