Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01594 ATGCTTTTGAAGCCCACATTCTTGATGGGACTTGTTTTCACCAAATGGGCATGCGCATTCTTACTCTGCTGTTGTCTCATCACTTCTGGGGTATATTCAGTGGAGGGTTTACATGGGAGTTCTAAAGTGAGAGGAGTGAACTTAGGAGGGTGGCTGGTCATCGAAGGTTGGATCAAGCCTTCACTATTTGATGGCATTGCCAATGGAGACATGCTTGATGGGACAGAGGTGCAATTTAAGTCAGTGACGTCGCAGAAGTATGTATCTGCCGAGAATGGGGGAGGAATGAATGTGACAGTTGACAGGGATGTTCCATCTTCATGGGAAACCTTCAGGTTATGGAGAACATCTGAATCAGAATTTCAATTTCGTACCTCGGAGGGTCAATTTCTTACGTGTGATGGTGGAGGCCACTCTGTCTCTGCAACAGCAAAATCTCCTTCAACGTATGAGACATATGAAATTGAGCGGAGTGGGAAAAATAGAATTCACCTCAAGATAAAGGGTGGAGCATATCTTCAGGCTACAACCGATGGTCAGCTTTCAGCGAACTACCCAGGAACACCAGGATGGGATGATAATGCTGCCACGTTTGAAATGACAATTGTGTCAAATAGCTTGCATGGAGATTACCAGCTAGCAAATGGATATGGGCATAATCGGGCAAAAGATGTTCTTAGGAGACATAGAAATAGCTTTATCACGATAGAGGATTTCAAATTTCTATATAAACATGGAATAAATACTGTGAGGATACCAGTTGGGTGGTGGATTGCTTTTGATCCTGATCCTCCGGGTCCATATATCGGAGGAACTCTTGAAGCTCTAGATAATGCATTTTTATGGGCACAAGAATATGATATCAAATGCATAATTGACCTTCATGCTGCTCCTGGTTCTCAAAATGGAATGGAGCATAGTTCAAGCAGAGATGGATTTACGGGCTGGCCAACTTCCCCAGATTACATTTCTGAGTCATTACATGTTATTGAATTTTTAGTTTCGAGATATGCAAAACACCCTGCCTTGCTGGGAATTGAGCTATTGAATGAACCATCAGCTGGCACAGTTTCATTAGATGTTTTGATTCCGTATTACAAGCAGGGCTACCAAATTGTTCGCAAATACTCTTCATCGGCTTACGTGATAATATGCCAGAGAATTGGAGCTGCAGATCCTCTGGAACTGTATCAAGCCAACATAGGATCTCACAACATAGTTTTGGATTTACATTTCTACAATCTCTTTGACCCCTTCTTTGTTAACATGAGTGCTGTGGATAATATTCAATACATATACAAAAGCCGGGAAGGTCAACTGCAGGCCTTGAACAATTCAGATGGCCCACTTGTTTTAGTTGGAGAGTGGGTTAATGAGTGGAATGTGACAAAGGGATCCCAAAAAGACTATCAGGACTTTGGAAGGGCACAGTTAGATGTCTATAATGCAGCTTCCTTTGGATGGTGTTATTGGACAGTAAAAAATGACAGAGAGCACTGGGATTTTGAATGGAACATAAGGAACAACTATCTTCAATTAGGTAATTCATCCAGAAAACGGACCTTGAACATTCTAGGACTGTTAGGATTGGTGTTCACCTGGTTTTGTCTACTTCAATTTTTGTGA 1626 0.4188 MLLKPTFLMGLVFTKWACAFLLCCCLITSGVYSVEGLHGSSKVRGVNLGGWLVIEGWIKPSLFDGIANGDMLDGTEVQFKSVTSQKYVSAENGGGMNVTVDRDVPSSWETFRLWRTSESEFQFRTSEGQFLTCDGGGHSVSATAKSPSTYETYEIERSGKNRIHLKIKGGAYLQATTDGQLSANYPGTPGWDDNAATFEMTIVSNSLHGDYQLANGYGHNRAKDVLRRHRNSFITIEDFKFLYKHGINTVRIPVGWWIAFDPDPPGPYIGGTLEALDNAFLWAQEYDIKCIIDLHAAPGSQNGMEHSSSRDGFTGWPTSPDYISESLHVIEFLVSRYAKHPALLGIELLNEPSAGTVSLDVLIPYYKQGYQIVRKYSSSAYVIICQRIGAADPLELYQANIGSHNIVLDLHFYNLFDPFFVNMSAVDNIQYIYKSREGQLQALNNSDGPLVLVGEWVNEWNVTKGSQKDYQDFGRAQLDVYNAASFGWCYWTVKNDREHWDFEWNIRNNYLQLGNSSRKRTLNILGLLGLVFTWFCLLQFL 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01594 541 Pfam Cellulase (glycosyl hydrolase family 5) 234 496 IPR001547 GO:0004553|GO:0071704
Vimu6g01594 541 Pfam Fascin domain 94 185 IPR022768 GO:0030674|GO:0051015
Vimu6g01594 541 Gene3D - 55 193 - -
Vimu6g01594 541 ProSitePatterns Glycosyl hydrolases family 5 signature. 344 353 IPR018087 GO:0004553|GO:0005975
Vimu6g01594 541 SUPERFAMILY Actin-crosslinking proteins 77 197 IPR008999 -
Vimu6g01594 541 SUPERFAMILY (Trans)glycosidases 40 520 IPR017853 -
Vimu6g01594 541 PANTHER FASCIN 39 513 IPR010431 GO:0007015|GO:0051015
Vimu6g01594 541 Gene3D Glycosidases 194 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01594 Vimu-Chr6 14728647 14734294 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01594 - - gmx:100809472 1024.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01594 6 14728647 14734294 Vimu6g01594 6 14728647 14734294 ECH