Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01571 ATGAATCCTCTGTGCTGCATTGCACCGGTTTCGATCGATCGGGACAGGGCGAACCCTGTGGTGGCGAAATCGCCGAGTCAGTGTCAGCTAGGGCTCGATGCGGCTGTCAGGACGGTGAACTACGCGTCCAAATCGAGCTTCTCCACGCTGGATTCCTCAGTAGGTTCGGATTCCGTCAAGGCATCCGCTGTTGCGGATCTCGAGGAGGAGGAGGAGCCGCGCGATTCGAAGGCTTTTGGAGGCGGAAATGGAGGCGGCGTCGCCGGGAGTGTCGCTGGGATCCTGTACAAGTGGGTGAATTACGGGAAGGGGTGGAGATCGAGGTGGTTCGTGCTGGAAGATGGCGTGCTTTCTTATTACAAGATTCACGGACCGGACAAGATCTTGATGAGTCCGGCGAGGGATAGGAGCGTGAGGGTGATCGGAGAAGAGTCATCGAAGTTCGTGAAGAAGGCGAACTGGAATCTGAATCGAGCACCTTCTGGAGGGGCAGGGGGAGGGAACAGTAACAACGGGAAGCAATGCAAACCGTTCGGTGAGATACATTTGAAGGTTTCTTCAGTTCGTTCCAGCAAGTCTGACGAAAAGCGGCTATCCATATTTACTGGGACAAAAACTCTCCACTTGCGGTGTGTCTCTAGAGAAGACAGAGCCATGTGGATTGAGGCCTTGCAGTCAGCAAAAGATCTTTTTCCCAGAACTCTAACAAGTAGTGATCTTGCAACTTCAGAAGATATTGTGGTTTCCACAGAGAAGCTGCGATCACGATTGTCACAGGAAGGCATAAGTGAAGCAATCATTAATGACTGCGAGTCGATTATGCTTTCCGAAGTATCTTATCTCCAAAGCAAGTTGAAGTATCTTCAGCAGAAACATGTTATGCTGCTGGACACCTTAAAACAACTGGAGACAGAGAAAATAGAGTTGGAAACTACTGTAGTTGATGAAACAAAGGAACGGGAATCATACTGTGGACAAGGAAATAGAAGGTTTAGTGATTTTTATTCTGTGATGTCGGAGGGTAGTGCTACTGACTCAGTGGCTGATAATGAAAGTCAAGATGGAGCAGATGTTGAAACAGATGATGATGATAGAACATATTTTGACACAAATGAGTTTTTGTACTCTGATGCCCTAAGAAGTGCATCCTATCGAAGTAGGGAAGGTATGACCAATGGAAGTATATATGATAGAGATTATATTTGTTATGATGGTGTGCATGGGTTCGAGGAGATCAAAGATGTAAGGTATCCATATGTCAAAAGAAGAGATAACTTACCAGAGCCAAAAGAAAAAGAGAAGCCTGTTGGCTTGTGGTCAATTATTAAAGACAATATTGGGAAGGATCTTTCAGGAGTTTGTCTCCCTGTTTATTTTAATGAACCACTATCGTCATTGCAAAAGTGTTTTGAAGACCTAGAGTATTCATACCTGGTTGATAGAGCATTGGAATGGGGAAAGCAGGGGAATGATCTGATGAGAATTCTAAATATTGCAGCTTTTGCTGTATCCAGCTATGCATCAACTGAAGGTCGACAATGTAAACCTTTTAATCCTTTACTTGGGGAGACTTACGAAGCGGACTATCCAGATAAAGGACTTAGGTTTTTTTCTGAAAAGGTTAGTCATCATCCGATGATTGTTGCTTGTCATTGTGAGGGAAGGGGGTGGAAGTTTTGGGCAGATTCTAATTTGAAAGGAAAATTCTGGGGGCGTTCAATCCAGTTAGATCCTGTGGGTGTCCTGACTCTACAATTTGAGGATGGTGAAACATTTCAGTGGAGCAAGGTCACCACTTCCATATACAATATCATATTAGGTAAAATTTATTGTGACCACTACGGTACCATGCACATCAGGGGCAGTGGCAACTATTCTTGCAAACTGAAATTCAAGGAGCAATCTATTATAGACCGAAATCCACATCAGGTCCATGGATTTGTTCAAGACAACAGAACCGGAGAGAAGGTAGCAATGTTAATTGGGAAGTGGGATGAAGCAATGTACTATGTACTAGGGGATCCAACTACTAAGCCAAAAGGTTATGATCCGATGACAGAAGCTGCGATATTGTGGGAAAGGGACAGCTCTGTATCCAAGACAAGATACAACCTCTCTCCTTTTGCAATTTCCTTGAATGAAATATTACCTGGTTTATTAGACAAGTTGCCCCCGACTGACTCAAGGTTGAGACCAGATCAAAGACATTTAGAAAATGGAGAATATGAGTTGGCAAATGCAGAGAAACTGAGACTTGAGCAGTTGCAGAGACAGGCAAGAAAGATGCAAGAAAGAGGATGGCAGCCGAGATGGTTTAAGAAGGATGATGATGGTTGCTACCGATATATTGGTGGGTATTGGGAAACAAGAGAAAAGAATAATTGGGATGGAATCCCTGATATATTTGGACAGAGTTGTGATTTACCTTCATGTTCCACGGAAGAGACTGTATCCTACTGA 2460 0.4423 MNPLCCIAPVSIDRDRANPVVAKSPSQCQLGLDAAVRTVNYASKSSFSTLDSSVGSDSVKASAVADLEEEEEPRDSKAFGGGNGGGVAGSVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDRSVRVIGEESSKFVKKANWNLNRAPSGGAGGGNSNNGKQCKPFGEIHLKVSSVRSSKSDEKRLSIFTGTKTLHLRCVSREDRAMWIEALQSAKDLFPRTLTSSDLATSEDIVVSTEKLRSRLSQEGISEAIINDCESIMLSEVSYLQSKLKYLQQKHVMLLDTLKQLETEKIELETTVVDETKERESYCGQGNRRFSDFYSVMSEGSATDSVADNESQDGADVETDDDDRTYFDTNEFLYSDALRSASYRSREGMTNGSIYDRDYICYDGVHGFEEIKDVRYPYVKRRDNLPEPKEKEKPVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDRALEWGKQGNDLMRILNIAAFAVSSYASTEGRQCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPMIVACHCEGRGWKFWADSNLKGKFWGRSIQLDPVGVLTLQFEDGETFQWSKVTTSIYNIILGKIYCDHYGTMHIRGSGNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLIGKWDEAMYYVLGDPTTKPKGYDPMTEAAILWERDSSVSKTRYNLSPFAISLNEILPGLLDKLPPTDSRLRPDQRHLENGEYELANAEKLRLEQLQRQARKMQERGWQPRWFKKDDDGCYRYIGGYWETREKNNWDGIPDIFGQSCDLPSCSTEETVSY 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01571 819 ProSiteProfiles PH domain profile. 88 229 IPR001849 -
Vimu6g01571 819 Coils Coil 285 319 - -
Vimu6g01571 819 MobiDBLite consensus disorder prediction 61 82 - -
Vimu6g01571 819 Coils Coil 745 765 - -
Vimu6g01571 819 FunFam Oxysterol-binding protein-related protein 2A 734 804 - -
Vimu6g01571 819 SUPERFAMILY PH domain-like 91 229 - -
Vimu6g01571 819 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 91 790 IPR000648 GO:0008289
Vimu6g01571 819 MobiDBLite consensus disorder prediction 342 362 - -
Vimu6g01571 819 Gene3D - 734 799 - -
Vimu6g01571 819 Gene3D - 88 231 IPR011993 -
Vimu6g01571 819 Pfam Pleckstrin homology domain 93 226 - -
Vimu6g01571 819 MobiDBLite consensus disorder prediction 63 77 - -
Vimu6g01571 819 Pfam Oxysterol-binding protein 438 791 IPR000648 GO:0008289
Vimu6g01571 819 SUPERFAMILY Oxysterol-binding protein-like 432 805 IPR037239 -
Vimu6g01571 819 Gene3D - 523 690 - -
Vimu6g01571 819 SMART PH_update 89 231 IPR001849 -
Vimu6g01571 819 FunFam oxysterol-binding protein-related protein 1D isoform X1 523 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01571 Vimu-Chr6 14611490 14617913 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01571 K20456 - gmx:100788779 1582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01571 6 14611490 14617913 Vimu6g01571 6 14611490 14617913 ECH