Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01569 ATGGACAAGATGCTCCAGAGCCCCGACGGAGACGTCACCATCACCAACGACGGCGCCACCATCCTCGAGCAGATGGACGTGGACAACCAAATCGCGAAGCTCATGGTGGAGCTTTCGAGGAGCCAGGACTACGAAATTGGCGATGGCACCACCGGCGTCGTCGTCATGGCCGGCGCCCTTCTCGAGAAGGCGGAGCGCCTCCTGGAGCGGGGAATTCATCCAATCAGGATCGCCGAGGGTTACGAAACGGCGTCTAGAATCGCGGTTGAGCATCTTGAGCGCGTGGCCAACAAGTTCGAGTTCGGGGAGTCCAATTTGGAGCCTCTCATTCAAACCTGCATGACCACACTCTCCTCTAAGATGTAA 366 0.5792 MDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEKAERLLERGIHPIRIAEGYETASRIAVEHLERVANKFEFGESNLEPLIQTCMTTLSSKM 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01569 121 PANTHER CHAPERONIN 1 121 IPR017998 GO:0140662
Vimu6g01569 121 ProSitePatterns Chaperonins TCP-1 signature 2. 14 30 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vimu6g01569 121 Pfam TCP-1/cpn60 chaperonin family 1 120 IPR002423 GO:0005524
Vimu6g01569 121 ProSitePatterns Chaperonins TCP-1 signature 3. 42 50 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vimu6g01569 121 Gene3D - 1 99 IPR027413 -
Vimu6g01569 121 Gene3D - 100 121 IPR027410 -
Vimu6g01569 121 SUPERFAMILY GroEL equatorial domain-like 1 98 IPR027413 -
Vimu6g01569 121 PRINTS Tailless complex polypeptide 1 (chaperone) signature 42 61 IPR017998 GO:0140662
Vimu6g01569 121 PRINTS Tailless complex polypeptide 1 (chaperone) signature 12 30 IPR017998 GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01569 Vimu-Chr6 14606820 14607262 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01569 K09497 - gmx:100817323 223.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01569 6 14606820 14607262 Vimu6g01569 6 14606820 14607262 ECH