Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01560 ATGGAATGTTGTATAATCTCCAGGCTAAGGGTTCAACCCCTATGGTTCGCGCTGCTCTTTCTTGTTGGACTATTGACGATTTTGAAACTAGCTTTCGTTGTTGTCAGATGGGTCTACGTCAATTTCCTCAGACCTCCCAAAAATCTTAGAAAGTACGGATCTTGGGCTGTCGTTACTGGACCCACTGACGGCATTGGAAAAAGCTTCGCTTTTGAGCTCGCGCGCAAAGGCCTCAACCTCGTACTCGTCGGTCGGAACCCCGACAAGCTTAAAGACGTGTCGGATTCGATCGCCGCTAAGTTCGGGAAAACCGAGGTCAAGACCGTGGTGGTCGATTTCTCGGGGGATCTGGACGAGGGTGTGGCCAAGATTGGGGAAGCGATTGAGGGGTTGGACGTTGGAGTGCTGATTAACAATGTGGGAGTTTCGTACCCTTACGCCAGGTTCTTCCATGAAGTGGACGAGGGGCTTCTCAACAACCTTATTAAGGTTAACGTTGTCGGAACCACCAAGGTCACGCAGGCTGTTCTGCCGGGGATGCTGAAGAGAAAGAGAGGAGCGATTGTTAACATTGGTTCTGGTGCCGCTATTGTGATTCCTTCCGATCCCCTTTATGCTGTTTATGCCGCCACCAAAGCGTACATCGATCAGTTTTCCAGAAGTCTCTATGTTGAATACAAGAAGAGTGGAATTGACGTTCAGTGCCAGGTTCCTTTATATGTGGCAACCAAGATGGCATCAATAAGGAAATCTTCATTCTTTGTTCCATCAACAGATGGATATGCCAAAGCTGGTGTGCGATGGATAGGTTACGAACCTCGATGCACGCCATATTGGCCACATACCCTTCTCTGGGCTGTTGCATGCTCATTGCCTGAATTTGTTGTTGATGCTTGGCGACTGTGGTTCTGCTTGGGTATTCGAAAGAGGGGACAACGCAAAGAGTCCACGAAGAAGGAATAG 963 0.4891 MECCIISRLRVQPLWFALLFLVGLLTILKLAFVVVRWVYVNFLRPPKNLRKYGSWAVVTGPTDGIGKSFAFELARKGLNLVLVGRNPDKLKDVSDSIAAKFGKTEVKTVVVDFSGDLDEGVAKIGEAIEGLDVGVLINNVGVSYPYARFFHEVDEGLLNNLIKVNVVGTTKVTQAVLPGMLKRKRGAIVNIGSGAAIVIPSDPLYAVYAATKAYIDQFSRSLYVEYKKSGIDVQCQVPLYVATKMASIRKSSFFVPSTDGYAKAGVRWIGYEPRCTPYWPHTLLWAVACSLPEFVVDAWRLWFCLGIRKRGQRKESTKKE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01560 320 PRINTS Glucose/ribitol dehydrogenase family signature 131 142 IPR002347 -
Vimu6g01560 320 PRINTS Glucose/ribitol dehydrogenase family signature 55 72 IPR002347 -
Vimu6g01560 320 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Vimu6g01560 320 PRINTS Glucose/ribitol dehydrogenase family signature 180 196 IPR002347 -
Vimu6g01560 320 PRINTS Glucose/ribitol dehydrogenase family signature 208 227 IPR002347 -
Vimu6g01560 320 Gene3D - 49 266 - -
Vimu6g01560 320 FunFam very-long-chain 3-oxoacyl-CoA reductase 1 49 277 - -
Vimu6g01560 320 Pfam short chain dehydrogenase 55 247 IPR002347 -
Vimu6g01560 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 194 IPR002347 -
Vimu6g01560 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 142 IPR002347 -
Vimu6g01560 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 227 IPR002347 -
Vimu6g01560 320 PANTHER RH59310P 14 319 - -
Vimu6g01560 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 52 310 IPR036291 -
Vimu6g01560 320 CDD 17beta-HSD1_like_SDR_c 53 295 - -
Vimu6g01560 320 PIRSF 11-beta-HSD1 4 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01560 Vimu-Chr6 14571418 14573509 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01560 1 320 Lipid Metabolism Gene Families AT1G67730 65.312 1.54e-164 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01560 K10251 - gmx:100814139 603.979