Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01555 ATGATGTCGTTTTTGAGAACCAAAGAAACAGGACAGAAAGGTCAACGACGAGTCTCACAACGTTACCGTTTACCCCAGACACAGACCAGTTTCAGGATCTGTAGTAGAAATAGAAATTGCAGATCCGAATCTCGTTTGGGAGTGAGGAATTTGAATGTTGAGATGTCTGAGAATCACGTAGCGGAGCTGGTTTCGGAAGCGGATTCGGATTCAGGGGGTGGTGTGGGGCACGACCAATCAAATGTGGATACCGAATCAAACACTGGTACAAATCAAGACCAGGGAGAGCGTGTTGATCATGGGGAACCTGATGATGAAAAGGCTGCAGAGGATACTGCCAGGGATGACATGTTTGTTGATTGTCCCGATGAGTTAACCGGGCAAAAGGATGAAGAAGTTTCAACTGAGAAGAATGAAGATGACGGAACGGAGGAAAATGAAGTTATGCATCACCAGCAGAGACATTCTGTTGAAATGGGCAATGGAGTGGGGGATGCTCACTCCCCAGATCAGCTGGAGAAAACTGATGCTGAGAAAGAACGGATTTTGCAGGAATACCAGGAAGAAAGACAAACTGTTACACAGGGAGTGCTTGATCTTCATTGTCAGCTAAAGACTCTGAATGGCAAAGAGAATGGAACTGAAGTTGGAGGTAGGGACGTGAGTGAGTTTCCGTTGAGGGAGATGATAAAAGAATGTTTGGAATTTGTGAACACTGCTTCAGAAGAACGGTCAAACAGTGAAACCACTATCAGTAATCTTCGGGAACATCTATCTACCAGGGACCGTGAGATAGAGGATCTTAATACAAAGCTAGCTCAGTTAATGGTATCTAATGATAATTTTCAGGTTTCAGGTCAAGCTCAACTTGAAAAGGATCATTTTGTTGAGAATTTGATGGATAAAACGATATCCTCTCTTGCAACAGTTGTCACTCAAGAACAAGTATTGGATGATTCTATTAGTGGGAAAATAGTTTATATTGAAGAAGGCACTACGCATTTAATTGGAAAGTACAATCAGATTCTTTCTGAAATTTATCAACTTGGGCAATCTTTCTCCCAGGTAGGCTTGGATTCTAAAGAGCAGCAATATGGGAGCATACTTGCCGGTGCTCATGGTGGGTTACTGGAGCTCAAAAGAAAGGAAACAGAATTGGTTGAAAAACTGGCTCAGTTAGAAGATGAAAACCGGAAATTGGTTGATGAGCTTGATAAGGAAAAGGTGATGCTAGGGACATTGAATACTGAGCTTGGAAATTTGAAAATAGAACTTGAGCAGGAAAAGGTTAAATGTGCTAATACGAAAGAAAAGCTTAGTATGGCTGTGACTAAAGGAAAGGCATTGGTACAGCAGCGAGATTCGTTAAAGAAGTCTCTGGCTGATAAATCCAGCGAGCTTGATAAATGCTTGATTGAATTGGAAGAGAAGTCAGTCGCACTCCAAGCTGCTGAGCTTGCCAAGGAAGAGTTGGCCCATAGTGAAAATATGGTCGTTTCCCTACAGAACTCATTATTAGAAAAGAATGCAGTTTTGGATCAAGTGGAAGAAATCTTGTCTTATGCCAAACCTGATGATCCTGGAATGTTTGATGTGCCAGAGAAACTCAGATGGCTTGCGGATGAGAGAAATACACTGAAGGAAGCCTTCATAGAGTTGTGCAAATTGAAGGAATCTCTATCTCTAGTGGACATACCAGAGCCTGTTTCATCATATGATTTGGAATCACAAATGAATTGGATTGTGGATTCTTGTCTTAGGGCCCGGGAGATCATGGACACTCTACAGGAAGAAAATTCCACAATCATGGAAGCATCCCGTTACAATGTTGATCAGTTGAGTATTTCTCTTGTGCTGGAATTGCAGGAAAAATATTACCTTCTGTCAGAATTAACCGATTTGAAGTTCAAATATGATGAACTTTTTGGCAAGAACTCTCAAATTTCTTTGGAGAAGGATCAGATAGTCAATATGTTAGTCGATCTTTGTGGCCTGAACAAGGAAGATGAAAGGATTGACTATTCCAACACTTCTGTGATCATCGACTTATGCTTTCAAATTCTAAAAGGGCAGAGTGGTCCCTTCTCTAGAGCATCTAAGGTTGATGCTGAGTTGTTTGAAAACATTCAAAGTCTCTTGTATGTTAGAGACCAAGGTTTAATACTCTATGAAGATATACTAGAAGAGGAGATGCTAATTAGATCAAGTACAAATAAACTTTCAGAAGAACTAAAAGCGGCATCTGAGGAAATTATAACTCTGAAAGAAGAAAGGAGTTCTCTGCTGCAAGATCTTGATCGATCAGAGGAGAAGACTGCCATGCTTAGGGATAAGTTGTCCATGGCAGTTAAGAAAGGAAAGGGGCTGGTTCAGGACAGGGACAATCTAAAAGGTCTTCTAAATGAAAGGAATGCAGAGATTGAGCAGTTGAAGGTTGATTTGCAGAAGCAAGAATCTGCTGTTTCTGAATACAGGGATGAGATCAACAGATTGTCCAGTAATGTGGAAAGCATCCCAAAGCTGGAGGCTGATCTTCTGGAAATGAAAAGGGAGAGGAATCAGTTAGAACAATTATTAACTGAGAGCAATAACATGTTACAGAAAGTGATGAAGTGTATTGATGGTATCATTCTTCCTGTTGAGCCTGCTTTTGATGAACCAATAGAAAAGGTGAAGTGGCTTGCTGATTATGTCAGTGAATGCCAAGATGCCAGGGTACACATAGAGCAAGAGTTGCAGCTAGTGAAGGAGAATGCCAGTATACTTGAAATTAAAGTAGCTGAATCCCAAGCCACTGTAAAATCCCTTGAACGGGAATTATCGTCTTCGAATGACAGTGTTTCTCAACTTGCTGAAGAGAAAACAGAATTAGAACATCAGAAGGGAAAAATGGAGGAAGAGTTACAGAAAGTTAAAGGTAAAGTTGCCGAGGTCTTCAGTACCAACAAGTCACTCGAAGATGCCTTATCAGAAGCAGAAAAAGATATTTCTATTCTTTCTATAGAGAAAGAGCAAGCTCAAGCTAGCAGAGTTGCTGCTGAAAGAGAGTTAGAGAGTTTTAAAGATGAAGCAACCAGTCAAGCAAGCAAACTGGCAGAGGCTAGCAAGATCATAAAGGATCTGGAAGATAAACTATATCAGGTTGAGGGTACTAAGAAGTTACTTGAAGATGCGTTATCACAAGCAGAAAAAGATATTTCTATTCTTTCCGAAGAAAAAGAGCAGGCTCAAGTTAGCAGAGTAGCTGCAGAGAGAGTGTTAGAGAGTTTTAATGATGAAGCAGCCAGTCAAACTAGCAAACTGACCGAGGCCAGCAGGACCATAAAGGATCTAGAAGATAAACTATATCAGGTTCAGGGTACTAATAAGTCACTTGAAGAGGCATTATCACAAGCAGCAAAAGATATTTCTATTCTTTCTGATGAAAAAGAGCAGGCTCAAGTTAGCAGAGTAGCTGCAGAGAGAGTGTTAGAGAGTTTTAAAGATGAAGCAGCCAGCCAAACAAGCAAAATGGCACAGGCTAGCAGGAAAATAGAGGATCTAGAAGATAGACTATCTCAGGTTGAGGGTAATGTCAATTTATTGACTGAAAAGCATAATGCTGATCAAGTTGTCAAGACTGAGATGGAAAATGAATTGAAGAAGCTGCAAGATGAAGCTGCAAATCATGCCAACAATTTGGTAGATGCTTCTGAAACTATAAAATCACTGGAGGATGCATTATCAAAGGCACAAGATGATGTTTCCACCTTAGAAAATTCAAATAAAATTGCAAAGCAGGAGATATCTTCACTCAATTTGAAGTTAAATTCATGCATGGACGAGTTAGCTGGAAAGAATGGCAACTTAGAAAACAGGTCCTTAAAGCTCATTGGACTTCTTAATGATCTTCAGGTGCTCATGAAGGACACTACTCTATTTCCCAGAATAAAACAATTCTTTGAGAGGAAATATGAGACCCTGAAGAATATGAGTCTCGTTGTTAACAAAATTAGAGATAATGTTTCCTTGACTGCAAAGGACTCAAAGGGACAGCTAGTGGTGGAGGTAGTATCGTTACCACCGCTTTTGGTTGTTATTATTTTCTTTTATTCCGAAAATACACATATGAGAAAAACATTCTTGGATGGTCCTAAAAATTTTGAAGTTGAACTGGACAACACAGAGATTGATGATGCTGATATTGACACCATAATCTTATCATTCGGAAAGATTGTGAAAGAATTTGAGTTGAGCAGCAAACACATTGCAGATAAGTTTGATGAATTTTCGTATTCTATGGATGAGTTTATTTCTCCTCTCCATGAAAAACTGTTGGAAACTGAGGCCATCTCGGAGACTATTGTTCAGAACATGGAAAGTTTGAAAGAAGAAGCAAATACCATGAAAAAGTTGAAAGAAGAACAGGAAAATATTATTGCCACTTTAGAAAACAATATCAATATATTGCTATCTGCATGCAGTGATTCTACCATTGCACTTCAGAGTGAAGTTGACAAGAATCTTGGGCTGTTAGACTCCATTTCTGAGGTTGAAAAGTTAAACCTTGAAGCAGATGCGCAAGCAGATCATCATAAGAACGGTAAATACGTGGAGGCCACACATAAGTTGATTAGTACTTCTAGAAAAGCTCAAGCTTTGATTAGACAGTTTGAATTTAGAAGTGAGCAGTTAGATGCAACAATTGAAGATTTACAGAATAAATTGAAAGAAGCAACAGTTGCTTTTGAATTAGTCACAGATGATAGAGACTTAAATAAAAACAGAGTTTCGCTGCTGGAATCTGATATTCAATCACTCCAAAGTGCTTGCAGTGAGCTTAAGGATAAGTTAGAGAGTTATCATGCCCTAGAAGAAAAATTGAAAGAAAAAGAGGCCGAGATTTCATCGATGCACGATGCTTTGTTGGCAAAAGAAGAAAACTCCCTCCTTACATCATCTCAAATGAGAGATGTCTTTGACAAGATAGATAGGATCAAAATCCCTATTGTAGAGTCTGAAGATGACTTGGAGCTACCTACTTCAGCCCCTATGAAAAAACTCTCTTACATTATTGATAGTATTACTAGGTTGCATGATCAATTAAACTCTATGTCTCATGATAAAGAAAAGCTGCAGTCAATCGTTGAAACAAAGGATCTTGAAATTAAGGATATGAAGGAGGAAGTTAAACAACTCAGTAGAAACTGTGAAGATGCAAAAATGCTCAAGAATGAATTGTCTGAGCTCACTTATGTATTAGAAAAAATTATGGATATTTCTTTGGGAGCCGGTGAATGGGTTGTAAATAGGAAATCTAAGGATTTGAAGGAATTAATACCAGCATTGGAAAAACGTATTGTTGCCATTCGTTCAGAATGTGATGATTCAAAATCCAAGGCCCAAGAACTTGATATTAAGTTAGTTGGAAGTCAGAAGGTTATTGATGAATTAAAAACCAAGGTTAAACTACTTGAAGATTCACTTCAAGATAGGACTTCTCAGCCAGACATTGTCCAGGACAGGAGCATATATGAAGCATCCTCATTACCTACTGGGTCTGAGATAACTGAAGTTGAAGAGGTGGGTTCATCACGTGGCAAGAAAGCAATATCACCTGTCTCATCAGCTGCTCATGTGCGGAATATGCGAAAAGGATCTGCTGACCATCTTGCACTTGATATTAGTATGGAGTCTGATAATTTGATTAACAGAGTGGATACGGATGAGGATAAAGGTCGCGTATTCAAGTCTCTAAACACTTCTGGATTTGTACCAAAACATGGAAAACTCATTGCAGATCGTATAGATGGACTCTGGTTATCTGGTGGTCGAGTTCTCATGAGTCGTCCTAGAGCAAGATTAGGACTTGTTGAAAAGTTGAGATCAAACCTACCTGGACTTCGCAACATTGGATGTCCGGCGTCTGCAAATTGTATTGTAGATATAAAGTTGTCTCTTATTATTCATTATTATGATCAAAATCAAGGAAAGCCTTTACCCAAGTTTGGGGATTGGGATGTGAATGATCCTGCTTCAGCTGAAGGATTCACTGTTATATTCAACAAAGCCAGAGATGAAAAGAAAGTTGCCTCAGTCTCGGGACGATTCCCTTCTCAGCGAAAATACGATTCTCGAAAACGCAAGAATCAAAAAAAGAGCAAGAGTGCCTCTAACACAAAGGTACATTATTGCCTTCAAACTATGATTAAGAATTACCAGGTTTTCATGATCTGA 6216 0.3925 MMSFLRTKETGQKGQRRVSQRYRLPQTQTSFRICSRNRNCRSESRLGVRNLNVEMSENHVAELVSEADSDSGGGVGHDQSNVDTESNTGTNQDQGERVDHGEPDDEKAAEDTARDDMFVDCPDELTGQKDEEVSTEKNEDDGTEENEVMHHQQRHSVEMGNGVGDAHSPDQLEKTDAEKERILQEYQEERQTVTQGVLDLHCQLKTLNGKENGTEVGGRDVSEFPLREMIKECLEFVNTASEERSNSETTISNLREHLSTRDREIEDLNTKLAQLMVSNDNFQVSGQAQLEKDHFVENLMDKTISSLATVVTQEQVLDDSISGKIVYIEEGTTHLIGKYNQILSEIYQLGQSFSQVGLDSKEQQYGSILAGAHGGLLELKRKETELVEKLAQLEDENRKLVDELDKEKVMLGTLNTELGNLKIELEQEKVKCANTKEKLSMAVTKGKALVQQRDSLKKSLADKSSELDKCLIELEEKSVALQAAELAKEELAHSENMVVSLQNSLLEKNAVLDQVEEILSYAKPDDPGMFDVPEKLRWLADERNTLKEAFIELCKLKESLSLVDIPEPVSSYDLESQMNWIVDSCLRAREIMDTLQEENSTIMEASRYNVDQLSISLVLELQEKYYLLSELTDLKFKYDELFGKNSQISLEKDQIVNMLVDLCGLNKEDERIDYSNTSVIIDLCFQILKGQSGPFSRASKVDAELFENIQSLLYVRDQGLILYEDILEEEMLIRSSTNKLSEELKAASEEIITLKEERSSLLQDLDRSEEKTAMLRDKLSMAVKKGKGLVQDRDNLKGLLNERNAEIEQLKVDLQKQESAVSEYRDEINRLSSNVESIPKLEADLLEMKRERNQLEQLLTESNNMLQKVMKCIDGIILPVEPAFDEPIEKVKWLADYVSECQDARVHIEQELQLVKENASILEIKVAESQATVKSLERELSSSNDSVSQLAEEKTELEHQKGKMEEELQKVKGKVAEVFSTNKSLEDALSEAEKDISILSIEKEQAQASRVAAERELESFKDEATSQASKLAEASKIIKDLEDKLYQVEGTKKLLEDALSQAEKDISILSEEKEQAQVSRVAAERVLESFNDEAASQTSKLTEASRTIKDLEDKLYQVQGTNKSLEEALSQAAKDISILSDEKEQAQVSRVAAERVLESFKDEAASQTSKMAQASRKIEDLEDRLSQVEGNVNLLTEKHNADQVVKTEMENELKKLQDEAANHANNLVDASETIKSLEDALSKAQDDVSTLENSNKIAKQEISSLNLKLNSCMDELAGKNGNLENRSLKLIGLLNDLQVLMKDTTLFPRIKQFFERKYETLKNMSLVVNKIRDNVSLTAKDSKGQLVVEVVSLPPLLVVIIFFYSENTHMRKTFLDGPKNFEVELDNTEIDDADIDTIILSFGKIVKEFELSSKHIADKFDEFSYSMDEFISPLHEKLLETEAISETIVQNMESLKEEANTMKKLKEEQENIIATLENNINILLSACSDSTIALQSEVDKNLGLLDSISEVEKLNLEADAQADHHKNGKYVEATHKLISTSRKAQALIRQFEFRSEQLDATIEDLQNKLKEATVAFELVTDDRDLNKNRVSLLESDIQSLQSACSELKDKLESYHALEEKLKEKEAEISSMHDALLAKEENSLLTSSQMRDVFDKIDRIKIPIVESEDDLELPTSAPMKKLSYIIDSITRLHDQLNSMSHDKEKLQSIVETKDLEIKDMKEEVKQLSRNCEDAKMLKNELSELTYVLEKIMDISLGAGEWVVNRKSKDLKELIPALEKRIVAIRSECDDSKSKAQELDIKLVGSQKVIDELKTKVKLLEDSLQDRTSQPDIVQDRSIYEASSLPTGSEITEVEEVGSSRGKKAISPVSSAAHVRNMRKGSADHLALDISMESDNLINRVDTDEDKGRVFKSLNTSGFVPKHGKLIADRIDGLWLSGGRVLMSRPRARLGLVEKLRSNLPGLRNIGCPASANCIVDIKLSLIIHYYDQNQGKPLPKFGDWDVNDPASAEGFTVIFNKARDEKKVASVSGRFPSQRKYDSRKRKNQKKSKSASNTKVHYCLQTMIKNYQVFMI 2071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01555 2071 MobiDBLite consensus disorder prediction 2025 2052 - -
Vimu6g01555 2071 Coils Coil 1031 1079 - -
Vimu6g01555 2071 MobiDBLite consensus disorder prediction 2035 2049 - -
Vimu6g01555 2071 MobiDBLite consensus disorder prediction 1 24 - -
Vimu6g01555 2071 Gene3D - 1169 1334 - -
Vimu6g01555 2071 SUPERFAMILY Tropomyosin 884 1115 - -
Vimu6g01555 2071 Coils Coil 1448 1486 - -
Vimu6g01555 2071 Coils Coil 1808 1828 - -
Vimu6g01555 2071 MobiDBLite consensus disorder prediction 95 136 - -
Vimu6g01555 2071 MobiDBLite consensus disorder prediction 942 962 - -
Vimu6g01555 2071 PANTHER CILIA AND FLAGELLA-ASSOCIATED PROTEIN 58-RELATED 1123 1949 - -
Vimu6g01555 2071 MobiDBLite consensus disorder prediction 65 151 - -
Vimu6g01555 2071 MobiDBLite consensus disorder prediction 74 94 - -
Vimu6g01555 2071 Coils Coil 737 771 - -
Vimu6g01555 2071 Coils Coil 838 868 - -
Vimu6g01555 2071 Coils Coil 1548 1582 - -
Vimu6g01555 2071 Coils Coil 919 1023 - -
Vimu6g01555 2071 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 1988 2022 IPR008700 -
Vimu6g01555 2071 Coils Coil 1590 1641 - -
Vimu6g01555 2071 Coils Coil 1702 1743 - -
Vimu6g01555 2071 Coils Coil 793 834 - -
Vimu6g01555 2071 Coils Coil 172 192 - -
Vimu6g01555 2071 Coils Coil 484 504 - -
Vimu6g01555 2071 Coils Coil 376 438 - -
Vimu6g01555 2071 Coils Coil 1094 1275 - -
Vimu6g01555 2071 SUPERFAMILY Tropomyosin 1042 1277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01555 Vimu-Chr6 14545369 14556991 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01555 - - vun:114191601 2011.88