Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01546 AAACTCCCTCGGAAGTCATCGAGAGGTCCCGAACACGGTGGAAGTGGAAAAGGCCATCATGGCGTTACCACTTCTTCGAAGAGCAGTGATTCTGTTAGTGTTTCCCAAGGTGGCACCAGACCGGGGAATTCTTCCGTTGCGGGGCAGAATCATGGTAACAGAGTTCCATTACCGAAGGTCGTGAATGAGAACAATATTCACAACAACCCCAATAACGGGATTTTGGCTTCCTACGAGGCATTGCCTGCATTCAGGGATGTTCCCTCTTCTGAAAAGACAACTTTGTTTGTGAAGAAGCTTATAATGTGTTCTGTGGTGTTTGACTTCACTGACCCCACCAAACACGTCAAGGAGAAGGAGATTAAGAGACAGACCTTGGTGGAACTCTTGGATTATGTGACTTCTGCGAATGCTAAGTTCGCGGAGAATGTGATGCTGGAGGTGGTGAAAATGGTGTCTTCAAACATATTCAGGACACTCAGTCCTCAGCCACGCGAGAATAAGATCGTTGACGGTGTTGATGTGGAGGAGGAGGAGCCTTCCATGGATCCTGCTTGGCCTCATTTGCAGATTGTGTATGAGCTTTTTCTGCGGTTTGTGGCCTCACCTGAGCTGGATCCGAAGTTGGCCAAGAGATACATTGATCAGTCCTTCATTTTGAAGCTGCTGGATTTGTTTGACTCCGAGGATCCGAGGGAGCGGGAGTACTTGAAGATGACTCTGCACCGTATCTATGGCAAATTCATGGCGCATCGCCCTTTCATCAGGAAGGCCATCAACAATGTGTTTTTTAATTTTATTTTTGAGACTGAGAAGCATAATGGGATTGCCGAATTCTTGGAAATTCTTGGGAGCATCATCAATGGTTTTGCATTGCCATTGAAAGAAGAGCATAAATTGTTTCTTGTTCGCATCCTGATTCCTCTGCACAAGCCAAAATGCTTGGCAATGTATCATCAACAGTTGTCTTATTGCATTACCCAGTTTGTGGAGAAAGACTGCAAACTTGCTGATACAATTATCAGGGGGCTGTTGAAGTACTGGCCCATAACAAATAGTTCAAAGGAAGTTATGTTCCTGGGTGAGTTAGAAGAAGTCTTGGAAGCAACTCAACCCCCAGAATTCCAGCGTTGTATGGTGCCATTGTTTCGTCGGATTGCCCGTTGTTTGAATAGCCCTCATTTTCAGACTAGTCAAATGACCAGTGCAGTGCAAGTTCGTGGGGGTGCTGGGATTGTAGAGCTTTGTCGGATTTTAGGATTCAGGATCCAACTACAAGATGCGAGACTTATGGGTTGTAGTAGTGGCAATGTTCTATTTTCCCTTGAAGATCCACAAACATATATCTTGTCTTTTTTTTTTCCTCAGGTGGCAGAAAGAGCTTTGTTCTTATGGAACAATGATCATATCGTGAACTTAATCAAGCAAAACAGAAAAGTGATACTGCCCATCATCTTCCCTGCATTGGAGAGAAATGCTAGAAGTCATTGGAACCAAGCTGTCCATAGTTTGACCTTAAATGTGCGGAAGATTTTTAATGATGTCGACGCTGATCTATCCAAAGAATGTTTACAAAAGTTTGAGGAAGACGAGTCAAAGGAAGATGAAGTCAAAGCAGGGCGTGAAGCCACGTGGAATCGGTTGGAAGAGCTTGCCATGAAGAAAGCTGCAAGTGGGGAAGCAGTGCTTATTGGTAAAGCACCAACTCGCCCCTCTGCAGGTTAG 1725 0.4487 KLPRKSSRGPEHGGSGKGHHGVTTSSKSSDSVSVSQGGTRPGNSSVAGQNHGNRVPLPKVVNENNIHNNPNNGILASYEALPAFRDVPSSEKTTLFVKKLIMCSVVFDFTDPTKHVKEKEIKRQTLVELLDYVTSANAKFAENVMLEVVKMVSSNIFRTLSPQPRENKIVDGVDVEEEEPSMDPAWPHLQIVYELFLRFVASPELDPKLAKRYIDQSFILKLLDLFDSEDPREREYLKMTLHRIYGKFMAHRPFIRKAINNVFFNFIFETEKHNGIAEFLEILGSIINGFALPLKEEHKLFLVRILIPLHKPKCLAMYHQQLSYCITQFVEKDCKLADTIIRGLLKYWPITNSSKEVMFLGELEEVLEATQPPEFQRCMVPLFRRIARCLNSPHFQTSQMTSAVQVRGGAGIVELCRILGFRIQLQDARLMGCSSGNVLFSLEDPQTYILSFFFPQVAERALFLWNNDHIVNLIKQNRKVILPIIFPALERNARSHWNQAVHSLTLNVRKIFNDVDADLSKECLQKFEEDESKEDEVKAGREATWNRLEELAMKKAASGEAVLIGKAPTRPSAG 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01546 574 FunFam Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit 83 298 - -
Vimu6g01546 574 MobiDBLite consensus disorder prediction 1 15 - -
Vimu6g01546 574 SUPERFAMILY ARM repeat 94 400 IPR016024 -
Vimu6g01546 574 MobiDBLite consensus disorder prediction 1 65 - -
Vimu6g01546 574 MobiDBLite consensus disorder prediction 19 51 - -
Vimu6g01546 574 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 24 557 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vimu6g01546 574 FunFam Uncharacterized protein 451 551 - -
Vimu6g01546 574 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 456 552 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vimu6g01546 574 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 81 399 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vimu6g01546 574 SUPERFAMILY ARM repeat 454 534 IPR016024 -
Vimu6g01546 574 Gene3D - 88 551 IPR011989 -
Vimu6g01546 574 PIRSF PP2A_B56 449 570 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vimu6g01546 574 PIRSF PP2A_B56 4 406 IPR002554 GO:0000159|GO:0007165|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01546 Vimu-Chr6 14495151 14499131 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01546 K11584 - gmx:100811438 851.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01546 6 14495151 14499131 Vimu6g01546 6 14495151 14499131 ECH