Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01545 ATGGATTCTGGTATGTCGTGGGCTGATCAATGGGACAACAACCCAGACCCATCCCCGACATTAGAGAAAGACAAGAAGAAGAGCAAGGACGAGTCAGGTAAGAGCAAATTTGGAAAGACCGGTGAAAGAGAAAAGACAAAAAGAGCAGAGAAAATGACGGAAAGTGAAGGAAAGCGTGCGAAAATGCTCAAAGAGAAGAAAGGTGGAAGCCTCCTCGTTTTCACCGGAGGTGCTGCGGTGCTCGCGATTGCGGCGAATCTCGCCATCGCCGCATTAAAGCACCACAAGGAAAAAAATGCAAAGAAGAAAGATCTTGCAGGTTCTAAGGTGCGTGTTAACCTATCCGCGCCTGAGATTCTTAAGTTAGCTGAACAAATCATTGCCAACTCGAAGAAGGTCCATAATTCTGTAGCGTCGGTGCCTCTCGACAAGGTTACATATGCAAATGTTATAGAACCTCTGGCAGAATTGCAAGCGCAGCAATTTCCACTGAAGATGGTATCTACTCGGGAGGATGTACGCAAGGCAAGTGCAGAAGCAGAGCGAAGAATAGATGATCATTTTGATGCGTGCAGAAATGCCCTACCAATCGAGGGATATAGGATAGATTTGGCAAGGATGAAGTCTTGCCTATTGAGAGTGAGGATGAGTTCACACTACACTTTAAGCTGCGTGCATGGCTTGGTTGGTCTTATGAATTTGTTTGCACCACCTGCCAAAAATGGTTTCATGGATATTATTAGGTTGACTTTTCCAGATCAAATGCCTTGGATCAGCAAACGTGAAGATGTCTACCTTGTCATTAAAGCTTTTGCAGTAAGGGGCGAGAAGACAAATGCTGAAGCGAGGCGCTTTGTTCAAACTCTGGTGAGAGACTTTGAGCGAAATGGACTGAACCTCACTGCAAGCAAAAGAGAAGAGCTGCAGCGTATAAGAGCTCAGATCGACGAGTTAAGCATCAAATATATCCAAAATCTCAATGAAGATACCAATATTTTCCTCTTCAGTGAATCGGAGTTAGTTGGATTACCTCCGGAGTTTCTCAAGGATTTAGACAAATCGGAAAATGGGAAATTTAAAATTTCCCTGAGAAGTCATCACGTTGCAGCTGTACTTCAATTTTGCAAGGTTGGAACTACTAGGCAGATGGTAGCAGGGGCATATGGGAAGCGGTGTGGGGAAACCAACATTTCTGTCTTGGAAAGCCTGGTGCAACAGCGTCATAAATATGCTCGTTTACTTGGCTTTTCGTGCTATGCAGAGTATGCCATCGATGTTAGAATGGCAAAGACTCCAAAAAAGGTGTTTGAGTTCCTGAAAGACATATCAGCAAGTTTAACTGACTTGGCCACGAAAGAACTTAATATGTTGAAAGATTTGAAGAAGAAAGAAGAAGGAGAGCTTCCATTTGGAATTGAGGACCTACTATATTATGTAAAACGGATTGAAGAACAGAGCTACGATTTGGATTTTGGAGAAATCAAGCAATACTTTCCGATTAGTGTGGTTCTATCTGGGATCTTCAAAATTGTCCAAGATCTATTTGGCTTAAGGTTTGAGGAGATTTCAGGAGATGTTTGGCATTGTGATGTTCGTGTTTTTACAGTGCTGGACTTGGGTTCTAGCGAACTCTTAGGTTATTGCTACCTTGATTTGTTCGCAAGGGAAGGAAAATATGGTCATACCTGTGTGTTGGCTCTCCAGAACAGTGCATTAACAATCAGTGGGGCAAAACAGATACCAGTTGCATTGCTAATATCTCAGTGTCAGAAGGAAGCTGATGGTAGTTCTGGGTTATTGCGGTTTTCTGAAGTGGTCAGTCTTTTCCATGAGTTTGGCCACGTGGAGATGTTGGGCTTGCCGATACCAGAAGGAACCAATCCAGCGTCATATTTTCCTTCTACTGTCATAGGTTACGAGGCAGCTTGCTATAGTCGTATATGGAGTGAGGTTTGTGCTGCTGATATATTCGCCTCAAAGTTCTGCAACGATGTTTCAAACCAGCATGCCGGCATCCAATTCAGGAACAAGGTTTTGGCCACGGTCGGAATGAAAGATCCTAATGATGTCTTATCAGACTTTCTAGGAAGAGAACCGTCAATCCAAGCGTACATTGAGAACAAAGTCAATTATGTTTCATAA 2142 0.4328 MDSGMSWADQWDNNPDPSPTLEKDKKKSKDESGKSKFGKTGEREKTKRAEKMTESEGKRAKMLKEKKGGSLLVFTGGAAVLAIAANLAIAALKHHKEKNAKKKDLAGSKVRVNLSAPEILKLAEQIIANSKKVHNSVASVPLDKVTYANVIEPLAELQAQQFPLKMVSTREDVRKASAEAERRIDDHFDACRNALPIEGYRIDLARMKSCLLRVRMSSHYTLSCVHGLVGLMNLFAPPAKNGFMDIIRLTFPDQMPWISKREDVYLVIKAFAVRGEKTNAEARRFVQTLVRDFERNGLNLTASKREELQRIRAQIDELSIKYIQNLNEDTNIFLFSESELVGLPPEFLKDLDKSENGKFKISLRSHHVAAVLQFCKVGTTRQMVAGAYGKRCGETNISVLESLVQQRHKYARLLGFSCYAEYAIDVRMAKTPKKVFEFLKDISASLTDLATKELNMLKDLKKKEEGELPFGIEDLLYYVKRIEEQSYDLDFGEIKQYFPISVVLSGIFKIVQDLFGLRFEEISGDVWHCDVRVFTVLDLGSSELLGYCYLDLFAREGKYGHTCVLALQNSALTISGAKQIPVALLISQCQKEADGSSGLLRFSEVVSLFHEFGHVEMLGLPIPEGTNPASYFPSTVIGYEAACYSRIWSEVCAADIFASKFCNDVSNQHAGIQFRNKVLATVGMKDPNDVLSDFLGREPSIQAYIENKVNYVS 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01545 713 Gene3D Endopeptidase. Chain P; domain 1 89 192 IPR024080 -
Vimu6g01545 713 MobiDBLite consensus disorder prediction 18 62 - -
Vimu6g01545 713 Gene3D Neurolysin, domain 3 587 709 IPR024077 -
Vimu6g01545 713 Gene3D Neurolysin, domain 3 296 513 IPR024077 -
Vimu6g01545 713 Coils Coil 301 321 - -
Vimu6g01545 713 PANTHER PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED 617 707 IPR045090 GO:0004222|GO:0006508
Vimu6g01545 713 Pfam Peptidase family M3 618 706 IPR001567 GO:0004222|GO:0006508
Vimu6g01545 713 Pfam Peptidase family M3 373 615 IPR001567 GO:0004222|GO:0006508
Vimu6g01545 713 MobiDBLite consensus disorder prediction 1 62 - -
Vimu6g01545 713 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 277 706 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01545 K01392 - qsa:O6P43_023901 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01545 6 14469644 14482207 Vimu6g01545 6 14469644 14482207 ECH