Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01543 ATGGCTGCAAGAACAGTTGCCAAAGACATAATCACTCTTCGTGGTTCCGCAGCAATCGTTAGCGAGTTCTTCGCATATTTAGTGTATTTTGCAATCGATAAACTCATGTCTGAGTTTTTTGTTGGTTATTTTTCAAATCAGGATATGCTGCCAACAGGTTTGATCCTCGTCATTCTTTACAATCGCGGAGTTTATCCGGAAGAAAGTTTTGTGAAGGTGAAGAAATATGGGCTCCCCATGTTGCTCACTGAAGACGAGGGTGTCAAATCCTTTATAACCAATCTAACTGCTCAGATATCTGAATGGCTTGAGGCTGGCAAGTTGCAGAGGGTGGTCCTTGTTATAATGAGCAAGGCCACCAGTGAAGTGCTTGAAAGGTGGAACTTCAGCATTGAGACCGACGGTGATGTTGTTGAAAAGGGTGTCTCTCGAGAGAAGAGTGACAAAGAAATAATGAGAGAGATACAAGCGATTATGAGGCAGATTGCTTCAACTGAGCAAGACTATCTTCTTTCAGGTGTTTTTGATGTGTTAGCGTACACTGACAAAGATGTGGCAGTTCCTTTCACTTGGATTGAAAGTGATCCAAAACTTATTGCAAATCCACAAATGGTGAAATTGCATTCCTTCGACACTAAGATTCACAAGGTTGACACACTCGTATCATACAAGAATGACGAATGGGATGAACAGTAG 696 0.4181 MAARTVAKDIITLRGSAAIVSEFFAYLVYFAIDKLMSEFFVGYFSNQDMLPTGLILVILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFITNLTAQISEWLEAGKLQRVVLVIMSKATSEVLERWNFSIETDGDVVEKGVSREKSDKEIMREIQAIMRQIASTEQDYLLSGVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKNDEWDEQ 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01543 231 ProSiteProfiles HORMA domain profile. 41 221 IPR003511 -
Vimu6g01543 231 SUPERFAMILY The spindle assembly checkpoint protein mad2 57 227 IPR036570 -
Vimu6g01543 231 Gene3D HORMA domain 1 227 IPR036570 -
Vimu6g01543 231 PANTHER MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2 5 225 IPR045091 -
Vimu6g01543 231 Pfam HORMA domain 55 168 IPR003511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01543 Vimu-Chr6 14455866 14457315 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01543 K02537 - gmx:100789307 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01543 6 14455866 14457315 Vimu6g01543 6 14455866 14457315 ECH