Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01519 ATGTCGTTGGCATCATCATTCTCGATGCTCCGGCACCGCGCGGTGGCCTCCGCCGCTCCTCTCCTCCTGCGCCGCTTCCGGTCACTCCCAATTGCCGGCCGGCAGCAGCAAAACCCTAACAAGCAAGCTGCTCCGAGCCGCAACCTTCTGAAGGCGAAAAAAACGTTGAAGGAGTTTTCCTCTCTTGCCCCTGTCCTCTCGCTGGAAGACAGCCCCCCGCTCACTGAATCACAGGCCATCGGCGTCGTGGCGGCGTCGCAGGCGAACTTCATGCGCGTCATCGTTCCCGAAAACGACCAGCCTCCTTCTTCTGGAAGCTTCCGCGGGGTGGAGCTTCTCTGCGTGGTGAGGGCGCTGTTAAAGAAGATTAAGCGCAGAGTCATGGTCGGGGACAAGGTTCTTGTCGGTTCCGTGGATTGGGTGGACCGCAGGGGATGGATTGAGAACGTCTTCCACCGATCTTCTGAGATTCTTGACCCTCCCGTTGCCAACGTCGACCACCTTCTGGTGCTGTTCTCGCTCGAACAACCCAGGCCTGAACCGTTTACCCTCACGCGCTTTCTTGTCGAAGCTGAATCCACTGGAATCCCTCTCACGCTGGCACTCAACAAGACCGAGCTTGTGGATAAAGAGGTCATTAGTTCGTGGAAGGCCAGGCTGCGTAGCTGGGGCTATGAGCCGGTTTTTTGCAGCGTTGAATCTGGACATGGACTTGATCTTCTTGCATTCAAGTTGAGGGATCAAACGACAGTGATTGTGGGGCCTAGTGGAGTTGGGAAGTCTAGTTTGATAAATGCTCTTAGAAGCAATCCTTCTGATGTTGCGGAAGGGGAGAATTGGTTTGAGCCTATTTCTGGAAGCAAGTGGCTTGAGGATCAAAGGGTTGGGGAGGTTTCCACGAGAAGTGGCAGAGGAAAGCATACTACTCGCCATGTCTCTTTGCTTCCAGTATCTGGAGGGGGCTTTCTTGCTGATACTCCTGGATTTAACCAACCTAGTTTATTGAAAGTGACAAAGCAGTCTCTTGCACAGACCTTTCCTGAAATTAGGAAAATGCTCAGTGCGAAGGAGACCGAGAAATGCTCATTTAACAATTGCTTGCATCTGGGAGAACCTGGGTGCATTGTGAAGGGAGACTGGGAAAGATATTCATTCTATTTTCAACTTCTGGATGAAATCAGAATCAGGGAAGAGTTCCAACTTAGGACATTTGGAACTAAAAGAGAAGGGGACGTCAGGTTGAAAATGGGAGATATGGGTGTTCAGCAAGCGGAACCACGGTTGGAACCTAAAAAGCACAGGAGACAATCTAGGAAGAGGATTAACCAATCAATTTTAGACGACTTAGATGATGATGACGACAACGACATTGATGAGGAAAATGATCCCATTTTAAGGGCGCTACGTGATGAAAACTCTTAG 1422 0.5084 MSLASSFSMLRHRAVASAAPLLLRRFRSLPIAGRQQQNPNKQAAPSRNLLKAKKTLKEFSSLAPVLSLEDSPPLTESQAIGVVAASQANFMRVIVPENDQPPSSGSFRGVELLCVVRALLKKIKRRVMVGDKVLVGSVDWVDRRGWIENVFHRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKTELVDKEVISSWKARLRSWGYEPVFCSVESGHGLDLLAFKLRDQTTVIVGPSGVGKSSLINALRSNPSDVAEGENWFEPISGSKWLEDQRVGEVSTRSGRGKHTTRHVSLLPVSGGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSAKETEKCSFNNCLHLGEPGCIVKGDWERYSFYFQLLDEIRIREEFQLRTFGTKREGDVRLKMGDMGVQQAEPRLEPKKHRRQSRKRINQSILDDLDDDDDNDIDEENDPILRALRDENS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01519 473 Pfam RsgA GTPase 150 334 IPR010914 GO:0003924|GO:0005525
Vimu6g01519 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 393 IPR027417 -
Vimu6g01519 473 Gene3D Probable gtpase engc; domain 3 336 398 - -
Vimu6g01519 473 Gene3D - 152 334 IPR027417 -
Vimu6g01519 473 SUPERFAMILY Nucleic acid-binding proteins 79 153 IPR012340 -
Vimu6g01519 473 ProSiteProfiles EngC GTPase domain profile. 163 330 IPR010914 GO:0003924|GO:0005525
Vimu6g01519 473 NCBIfam ribosome small subunit-dependent GTPase A 127 270 IPR004881 GO:0003924|GO:0005525
Vimu6g01519 473 Hamap Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 79 397 IPR004881 GO:0003924|GO:0005525
Vimu6g01519 473 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 50 455 IPR004881 GO:0003924|GO:0005525
Vimu6g01519 473 Gene3D - 74 151 IPR012340 -
Vimu6g01519 473 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 154 332 IPR030378 GO:0005525
Vimu6g01519 473 CDD YjeQ_EngC 163 391 IPR004881 GO:0003924|GO:0005525
Vimu6g01519 473 MobiDBLite consensus disorder prediction 416 473 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01519 K06949 - gmx:100796145 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01519 6 14326774 14329625 Vimu6g01519 6 14326774 14329625 ECH