Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01500 ATGTCTCGGCCACGCTTATTGAACCCTAACCCAATCGATCTCGTGAATTCGAATCTCAGACTTTGTGTGGTTTTGCAGGTTGACAACAGAAATTCCTCCGCCGCCAAGCGTGCTAGGACTGATGGTAGCCGTAGGGAAGATGATTGGACTTGCCCCAGCTGTGGCAATGTCAATTTCTCTTTCAGGACAACTTGTAACATGCGTAATTGCACTCAACCAAGGCCAGCTGATCATAATTCGAAATCTGCTGCCAAGCCTCTACAAGCTCCACAGGGTTATTCATCCGCAGCTCCTTATTTAGGCTCTAATGCTCCATCTTCTATATATCTTAGTGTCCCACCATATGGATCTTCTCTGTTCAATGGATCATCAGTTCCTCCCTATGATGTTCCATTTTCTGGAGGATCAGCATATCACTACAATTATGGTAGTCGCCTCTCTGCTGGAAGTCCTTATAGACCATTGCATTTATCTGGACCTGCACCCTACACCGGTGGGCCAGTGATGGGAAATGGTGGGATCTATGGGATGCCCCAACTGTTGGATCGCTATGGCCTGGGTGTGCCTATTGGACCTGGGACAATGGGTGCCAGACCTGGATTTTTTCATGATGACAAGTCTCAGAAAAAGGACACAACTCGTGATAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTCTCATTTAGAACTGTCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAGGCCTCAAAGTCGGACAAAAATTCTAAGCAAAAGATGCCTGAAGGAAGCTGGAAGTGTGAAAAGTGTAACAACATAAACTATCCTTTCAGAACCAAGTGCAACAGACAGAATTGTGGTGCTGACAAGCCTGCTGAGTCTGATAAATCTCCTTCACCATCTGCTGATCAAAATGATCAGGTTTGTTGTCTAAAATGTTTTCATTTTGTTAACCTTCATCTGTTGTTGCAACAGTTGGTTTTCCAAGAGCAGCTTTGTGACATGATGAACATTTTCAAATTGCAATCTGTTGTGAAGTTGTCTTTTAAGTGGATTCCAAGGAAAAGCTTCAGTTTTGCTTCCTTTCATTTGAAACCTTTTTGTTACACCTTATTAGTTTCTTCCTATCTATCCGTTGCAATCTTTAATTTGCAATTATTTACTGTTCCAGTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAGAATTGCTCAATTTCGGTGTCTGA 1242 0.4316 MSRPRLLNPNPIDLVNSNLRLCVVLQVDNRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAAKPLQAPQGYSSAAPYLGSNAPSSIYLSVPPYGSSLFNGSSVPPYDVPFSGGSAYHYNYGSRLSAGSPYRPLHLSGPAPYTGGPVMGNGGIYGMPQLLDRYGLGVPIGPGTMGARPGFFHDDKSQKKDTTRDNDWTCPKCGNVNFSFRTVCNMRKCNTPKPGSQASKSDKNSKQKMPEGSWKCEKCNNINYPFRTKCNRQNCGADKPAESDKSPSPSADQNDQVCCLKCFHFVNLHLLLQQLVFQEQLCDMMNIFKLQSVVKLSFKWIPRKSFSFASFHLKPFCYTLLVSSYLSVAIFNLQLFTVPVSTRTCLRVEKVQSCHQELLNFGV 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01500 413 Pfam Zn-finger in Ran binding protein and others 45 67 IPR001876 -
Vimu6g01500 413 Pfam Zn-finger in Ran binding protein and others 215 244 IPR001876 -
Vimu6g01500 413 Pfam Zn-finger in Ran binding protein and others 260 290 IPR001876 -
Vimu6g01500 413 MobiDBLite consensus disorder prediction 241 263 - -
Vimu6g01500 413 SUPERFAMILY Ran binding protein zinc finger-like 40 77 IPR036443 -
Vimu6g01500 413 SMART zf_4 47 73 IPR001876 -
Vimu6g01500 413 SMART zf_4 216 242 IPR001876 -
Vimu6g01500 413 SMART zf_4 262 288 IPR001876 -
Vimu6g01500 413 FunFam ranBP2-type zinc finger protein At1g67325-like 38 77 - -
Vimu6g01500 413 Gene3D - 205 246 - -
Vimu6g01500 413 Gene3D - 37 77 - -
Vimu6g01500 413 Gene3D - 249 292 - -
Vimu6g01500 413 SUPERFAMILY Ran binding protein zinc finger-like 254 291 IPR036443 -
Vimu6g01500 413 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 184 250 - -
Vimu6g01500 413 SUPERFAMILY Ran binding protein zinc finger-like 207 246 IPR036443 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01500 - - gmx:100798624 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01500 6 14208249 14211796 Vimu6g01500 6 14208249 14211796 ECH