Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01479 ATGCCCATTTTCTCTGCAACTGCAACGTTCGCTTCCTACACTTCCATCTCCTTCCTCTCAGCTTCACAATCGCAATCACACCTTTCTCCTTTCCTCAATTTCTCCCATAAGTTTACTGTGAAGACACCGTGGCAATGGCAGCACCATCACTACCACACTCATAAACTCTTAATCTCTGCTTCTGGCAACACCCAAATTGACCAAAATCTTGAAAGTGGACTTCTTCAACGCCCTACTCCTCCAGACCCACAGGATGACGCTCGTCTTGCTCGGAGATCATCAGATTGGAAGGCTGCAAAGGCATATAAAGATAGTGGGCTCATTTATAACGGTAGGGTTGAAGGTTATAATTCTGGAGGCCTGCGGGTTCGGTTTTATTCTATTCTGGGGTTTCTACCATTCCCCGAATTGAGTCCAGTGCATACTTGTAAAGAACCAGAGAAACCTATCCAAGAAATTGCAAGAGGCTTAGTTGGTTCAGTCATATCGGCAAAGGTAATTCTAGCGGATGAGGATAACAAAAGATTGATATTCTCTGAAAAGGAAGGTGCGTGGTCCAAATTTTCAAAACAGATCAATGTAGGGGACATTTTTGAAGGAAAAGTTGGTTATGTTGAGGATTATGGTGCTTTTGTTCATTTGCGGTTCCCTGACGGTCTTTATCACCTTACTGGACTAATACACATCTCAGAGGTGTCATGGGATCTAGTTCAGGATGTCAGAGATATCTTAAAAGTAGGTGATCAAGTGAGGGCCAAAGTTGTCGGTATTGATGGGCTCACCTTATCAATTAAACAGCTAGAAGAAGATCCACTTCTAGAAACTCTGGACAAAGTAATACCTCAGGATGGTTCAGCTGATCTTGATTCTCTGAGCGGTGGTGAGGGTGATAGTATTGAACCTCTTCCAGGGCTTGAAACAATCCTTGAAGAGCTACAACAGGAAGATGGTATATATGATGTAAGAATCAGCCGTCAAGGGTTTGAAAAACGAGTGGTCTCGCAAGACTTGCAACTGTGGCTTTCTAATGCACCTCCCACGAACCAAAGGTTTACTCTACTTGCCCGTGCTGGAAGACAGGTACAGGAGATACATTTAACTACGTCTCTCGACCAGGAAGGTATCAAGAAGGCATTACAACGAGTGCTGGAGCGTGTCCCCTGA 1164 0.4424 MPIFSATATFASYTSISFLSASQSQSHLSPFLNFSHKFTVKTPWQWQHHHYHTHKLLISASGNTQIDQNLESGLLQRPTPPDPQDDARLARRSSDWKAAKAYKDSGLIYNGRVEGYNSGGLRVRFYSILGFLPFPELSPVHTCKEPEKPIQEIARGLVGSVISAKVILADEDNKRLIFSEKEGAWSKFSKQINVGDIFEGKVGYVEDYGAFVHLRFPDGLYHLTGLIHISEVSWDLVQDVRDILKVGDQVRAKVVGIDGLTLSIKQLEEDPLLETLDKVIPQDGSADLDSLSGGEGDSIEPLPGLETILEELQQEDGIYDVRISRQGFEKRVVSQDLQLWLSNAPPTNQRFTLLARAGRQVQEIHLTTSLDQEGIKKALQRVLERVP 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01479 387 Gene3D - 96 184 IPR012340 -
Vimu6g01479 387 Gene3D - 185 277 IPR012340 -
Vimu6g01479 387 ProSiteProfiles S1 domain profile. 195 258 IPR003029 GO:0003676
Vimu6g01479 387 SUPERFAMILY Nucleic acid-binding proteins 193 278 IPR012340 -
Vimu6g01479 387 ProSiteProfiles S1 domain profile. 106 181 IPR003029 GO:0003676
Vimu6g01479 387 Pfam S1 RNA binding domain 193 258 IPR003029 GO:0003676
Vimu6g01479 387 PANTHER OS03G0844900 PROTEIN 14 387 - -
Vimu6g01479 387 SUPERFAMILY Nucleic acid-binding proteins 106 181 IPR012340 -
Vimu6g01479 387 SMART S1_6 104 181 IPR022967 -
Vimu6g01479 387 SMART S1_6 193 265 IPR022967 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01479 Vimu-Chr6 14087304 14092967 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01479 - - gmx:100798303 622.468