Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01469 ATGTCGGAGATGGCGAGCCCAGATCCCGAGGGAGTGGACGGAGTGCGCATGACGTGGAACGTGTGGCCCCGCACCAAGGTGGAATCGAGCAAATGCGTCATCCCTCTGGCAGCCACCGTCGCCCTCATCCGCCCCCACCCTGACATCCCCCGCCTTCAGTACGCCCCTCTCCGCTGCAAGACTTGCTCCTCCGCCCTCAACCCTTTCGCCCGCGTCGACTTTACTGCCAAGATCTGGATCTGCCCCTTCTGCTATCAGCGCAACCACTTCCCCCCTCAGTACCACGCCATCTCAGAAACCAACTTCCCCGGCGAACTATACCCCCAATACACCACCGTCGAGTACATCCTCCCCCTCTCCAATTCCCTCAACCCATCCCCCGTTTTCCTTTTCCTCCTCGACACCTGTCTCATCGAGGAGGAGATCCAGTTCCTCAAATCAGCGCTTCGTCGCGCGATTGGCCTTCTTCCCGATAACGCACTCGTCGGCTTCGTCTCCTTCGGCACCCAGGTCCAGGTTCATGAATTGGGCTTCTCCGACATGTCCAAGGTTTATGTCTTCCGCGGTTCCAAGGAGATTCCCGCCGATCAGGTTCTCGATCAGCTAGGCCTTTCTACTCCCGGGAGAAGACCTCACAAGGCCTCCCCTGGGGTCGCCGGCGCCGGCGCCGGGGGATTACCAAGTTCCGGCATCACACGCTTCTTGCTGCCTGCTTCTGAGTGTGAATATACTCTCAATGCGCTGTTAGATGAATTACAGACGGATCAGTGGCCGGTTCCGCCTGGGCGCCGCCCTGCGCGCTGCACCGGGGTTGCTTTGAATGTTGCTGCGGGGTTGCTGAGTGCTTGTACTCCTGGGACTGGCGCTAGAATCATAGCTTTGGTTGGGGGGCCGTGCACGGAAGGACCTGGGGCGGGTAGTGAATATGGAGCTGGTGTTGGGGAGTTAAGTGTCACGGGGGGTGCTTGTCTTTGGAAGACACTACTCTTAAAATTGGCTTATGGTGTGCAAAATTTTGATTTTGTGCTGTCACTTGCTAGAAGCAAAATTGTTTCAAAAGATCTGTCTGACCCAGTGCGCTCTCATAAAGATCTTGATAAAGATGCAGCACCATACTTCAAGAAAGCAGTCAAGTTTTATGAAGGTCTCGCTAAACAGCTGGTTAGCCAGGGTCATGTGTTAGACATGTTTGCATCAGCACTTGATCAGGTTGGAGTTGCAGAAATTAAAGTTGCGGTTGAACGAACTGGTGGTCTTGTTGTCCTGGCTGAAAGTTTTGGTCATTCAGTCTTCAAGGACTCTTTTAAACGAGTTTTTGAGGATGGGGAACAATCTCTTGGTCTTTGTTTCAAATGTGCTCACTGTCAGCTTTATTCATGTTTCAGTGGAACCCTGGAGATAAATTGCTCAAAGGAAATCAAAATTCAGGGGGTGATCGGGCCTTGCACTTCCTTGGAAAAGAAAGGGCCTTCTGTTGCTGATACTGTTATAGGTGAGGGAAACACAACAGCATGGAAGATGTGTGGCCTTGACAAGAGCACATGCTTGACTGTGATGTTTGATCTTTCATCAAGTGAGCGGACAAACACCCCAGGTGCTGTCAACCCACAATTGTACCTACAGTTTCTTACAAGCTACCAGGACCCAAGTGGTCAATCAGTGCTTCGTGTCACGACAGTAACTAGAAGATGGGTAGATAGTACTGTTAGCTCTGAGGAATTGGTTCAAGGATTTGACCAAGAAACTGCAGCAGTTGTAATGGCTAGATTTGCTTCTCTAAAAATGGAGAGTGAGGAAACATTTGATGCTACACGGTGGTTGGATCGGTTTCTCATTCGCCTCTGTTCTAAGTTTGGTGACTATCGCAAGGATGATCCATCTTCTTTTACATTAAACCCATCATTTTCACTTTTTCCTCAGTTTATGTTCAATCTGCGCCGCTCACAGTTTGTACAGGTCTTTAACAACAGTCCAGACGAGACTGCATATTTCCGCATGTTGTTAAACAGGGAAAATATTAGTAATGCTGCTGTTATGATTCAGCCATCACTGATAGCATATTCATTTAATTCACTCCCTGCACCAGCATTGTTAGATGTGGCTTCCATTGCTGCAGACCGGATTTTGTTGCTAGATTCATATTTTAGTGTGGTTATTTTTCATGGGATGACAATTGCTCAATGGCGCAACTTGGGATACCAGAACCAGCCAGAACACCAGGCATTTGCACAGCTATTACGTGCTCCGCATGATGATTCCCAAATGATAATTAGAGAACGGTTCCCAGTTCCTAGATTGGTTGTGTGTGACCAACACGGTTCCCAGGCTAGATTTTTATTAGCAAAACTGAATCCCTCAGCAACGTATAATAATGCACATGAGATGTCCGCTGGTTCAGATGTAATCTTTACTGATGATGTGAGCCTTCAAGTTTTCTTTGAGCATCTGCAAAGATCTGAATTTTTGGGTTCCTCAGCTGGATTAATTTATATAGTTCTTTTACTTTTATATGTTCCCCAGGACACCATCTCCGTGAAATTGATACTTTGGCTGCCCTCTGTTCTATTACTTCCAATCCTGCATGAAGAGGGACATGCTTAA 2601 0.4848 MSEMASPDPEGVDGVRMTWNVWPRTKVESSKCVIPLAATVALIRPHPDIPRLQYAPLRCKTCSSALNPFARVDFTAKIWICPFCYQRNHFPPQYHAISETNFPGELYPQYTTVEYILPLSNSLNPSPVFLFLLDTCLIEEEIQFLKSALRRAIGLLPDNALVGFVSFGTQVQVHELGFSDMSKVYVFRGSKEIPADQVLDQLGLSTPGRRPHKASPGVAGAGAGGLPSSGITRFLLPASECEYTLNALLDELQTDQWPVPPGRRPARCTGVALNVAAGLLSACTPGTGARIIALVGGPCTEGPGAGSEYGAGVGELSVTGGACLWKTLLLKLAYGVQNFDFVLSLARSKIVSKDLSDPVRSHKDLDKDAAPYFKKAVKFYEGLAKQLVSQGHVLDMFASALDQVGVAEIKVAVERTGGLVVLAESFGHSVFKDSFKRVFEDGEQSLGLCFKCAHCQLYSCFSGTLEINCSKEIKIQGVIGPCTSLEKKGPSVADTVIGEGNTTAWKMCGLDKSTCLTVMFDLSSSERTNTPGAVNPQLYLQFLTSYQDPSGQSVLRVTTVTRRWVDSTVSSEELVQGFDQETAAVVMARFASLKMESEETFDATRWLDRFLIRLCSKFGDYRKDDPSSFTLNPSFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENISNAAVMIQPSLIAYSFNSLPAPALLDVASIAADRILLLDSYFSVVIFHGMTIAQWRNLGYQNQPEHQAFAQLLRAPHDDSQMIIRERFPVPRLVVCDQHGSQARFLLAKLNPSATYNNAHEMSAGSDVIFTDDVSLQVFFEHLQRSEFLGSSAGLIYIVLLLLYVPQDTISVKLILWLPSVLLLPILHEEGHA 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01469 866 Gene3D - 447 565 - -
Vimu6g01469 866 Pfam Sec23/Sec24 beta-sandwich domain 461 565 IPR012990 -
Vimu6g01469 866 SUPERFAMILY Zn-finger domain of Sec23/24 47 118 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vimu6g01469 866 SUPERFAMILY vWA-like 127 439 IPR036465 -
Vimu6g01469 866 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 682 818 IPR036180 -
Vimu6g01469 866 Pfam Sec23/Sec24 helical domain 579 675 IPR006900 GO:0006886|GO:0006888|GO:0030127
Vimu6g01469 866 FunFam Protein transport protein SEC23 681 785 - -
Vimu6g01469 866 FunFam Protein transport protein SEC23 53 112 - -
Vimu6g01469 866 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 349 819 IPR037364 -
Vimu6g01469 866 Pfam Sec23/Sec24 zinc finger 56 94 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vimu6g01469 866 Gene3D von Willebrand factor, type A domain 316 446 IPR036465 -
Vimu6g01469 866 Gene3D von Willebrand factor, type A domain 126 310 IPR036465 -
Vimu6g01469 866 SUPERFAMILY beta-sandwich domain of Sec23/24 8 578 - -
Vimu6g01469 866 CDD Sec23_C 671 791 IPR037550 GO:0030127|GO:0090114
Vimu6g01469 866 Gene3D Sec23/Sec24 helical domain 576 818 - -
Vimu6g01469 866 Gene3D Severin 681 785 IPR029006 -
Vimu6g01469 866 Pfam Sec23/Sec24 trunk domain 126 304 IPR006896 GO:0006886|GO:0006888|GO:0030127
Vimu6g01469 866 Pfam Sec23/Sec24 trunk domain 349 439 IPR006896 GO:0006886|GO:0006888|GO:0030127
Vimu6g01469 866 SUPERFAMILY Helical domain of Sec23/24 579 681 IPR036175 GO:0006886|GO:0006888|GO:0030127
Vimu6g01469 866 Gene3D - 53 111 - -
Vimu6g01469 866 Pfam Gelsolin repeat 691 779 IPR007123 -
Vimu6g01469 866 FunFam Protein transport protein SEC23 576 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01469 Vimu-Chr6 14043374 14049410 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01469 K14006 - gmx:100789860 1432.93